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Report for CCDS17258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17258.1 Public Mus musculus 3 Crh 23 108 98 CCDS HistoryNCBI Gene:12918Re-query CCDS DB by CCDS ID:17258.1Re-query CCDS DB by GeneID:12918See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061294.4 ENSMUSP00000061185.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061294.4Link to Ensembl Protein Viewer:ENSMUSP00000061185.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061294Re-query CCDS DB by Protein ID:ENSMUSP00000061185
Original member Current member NCBI NM_205769.3 NP_991338.1 Accepted alive Link to Nucleotide Sequence:NM_205769.3Link to Protein Sequence:NP_991338.1Re-query CCDS DB by Nucleotide ID:NM_205769Re-query CCDS DB by Protein ID:NP_991338Link to BLAST:NP_991338.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_991338.1 187 Q8CIT0 187 100% 0 0

Chromosomal Locations for CCDS 17258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19693913 19694476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGCGGCTGCGGCTGCTGGTGTCCGCGGGCATGCTGCTGGTGGCTCTGTCGTCCTGCCTGCCTTGCAGGG
CCCTGCTCAGCAGGGGATCCGTCCCCCGAGCGCCGCGGGCCCCGCAGCCCTTGAATTTCTTGCAGCCGGA
GCAGCCCCAGCAACCTCAGCCGGTTCTGATCCGCATGGGTGAAGAATACTTCCTCCGCCTGGGGAATCTC
AACAGAAGTCCCGCTGCTCGGCTGTCCCCCAACTCCACGCCCCTCACCGCGGGTCGCGGCAGCCGCCCCT
CGCACGACCAGGCTGCGGCTAACTTTTTCCGCGTGTTGCTGCAGCAGCTGCAGATGCCTCAGCGCTCGCT
CGACAGCCGCGCGGAGCCGGCCGAACGCGGCGCCGAGGATGCCCTCGGTGGCCACCAGGGGGCGCTGGAG
AGGGAGAGGCGGTCGGAGGAGCCGCCCATCTCTCTGGATCTCACCTTCCACCTTCTGCGGGAAGTCTTGG
AAATGGCCCGGGCAGAGCAGTTAGCTCAGCAAGCTCACAGCAACAGGAAACTGATGGAGATTATCGGGAA
ATGA

Translation (187 aa):
MRLRLLVSAGMLLVALSSCLPCRALLSRGSVPRAPRAPQPLNFLQPEQPQQPQPVLIRMGEEYFLRLGNL
NRSPAARLSPNSTPLTAGRGSRPSHDQAAANFFRVLLQQLQMPQRSLDSRAEPAERGAEDALGGHQGALE
RERRSEEPPISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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