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Report for CCDS17250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17250.1 Public Mus musculus 3 Car3 23 108 98 CCDS HistoryNCBI Gene:12350Re-query CCDS DB by CCDS ID:17250.1Re-query CCDS DB by GeneID:12350See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029076.5 ENSMUSP00000029076.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029076.5Link to Ensembl Protein Viewer:ENSMUSP00000029076.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029076Re-query CCDS DB by Protein ID:ENSMUSP00000029076
Original member Current member NCBI NM_007606.3 NP_031632.2 Accepted alive Link to Nucleotide Sequence:NM_007606.3Link to Protein Sequence:NP_031632.2Re-query CCDS DB by Nucleotide ID:NM_007606Re-query CCDS DB by Protein ID:NP_031632Link to BLAST:NP_031632.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031632.2 260 P16015 260 100% 0 0

Chromosomal Locations for CCDS 17250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14863572 14863605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14864250 14864447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14866803 14866921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14868349 14868441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14869235 14869297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14870042 14870197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14871542 14871661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCTAAGGAGTGGGGCTACGCCAGCCACAATGGTCCTGATCACTGGCATGAACTTTATCCAATTGCCA
AAGGGGACAACCAGTCACCCATTGAACTGCATACTAAAGACATCAAGCATGACCCCTCTCTGCAGCCCTG
GTCAGCATCTTATGACCCTGGCTCTGCTAAGACCATCCTGAACAATGGGAAGACCTGCAGAGTTGTGTTT
GATGATACTTATGACAGGTCTATGCTGAGGGGTGGTCCTCTCTCTGGACCCTACCGACTTCGCCAATTCC
ATCTTCACTGGGGCTCCTCTGATGACCACGGCTCTGAGCACACCGTGGACGGAGTAAAATACGCTGCTGA
GCTTCACCTGGTTCACTGGAATCCAAAGTATAACACCTTTGGAGAGGCTCTGAAGCAGCCTGATGGCATC
GCTGTGGTTGGCATTTTCCTGAAGATAGGACGGGAGAAAGGCGAGTTCCAGATTCTTCTTGATGCCCTGG
ACAAAATTAAGACGAAGGGCAAGGAGGCCCCTTTTACACACTTTGACCCATCATGCCTGTTCCCTGCTTG
CCGGGACTATTGGACCTATCACGGCTCCTTCACCACGCCGCCCTGCGAGGAGTGCATTGTGTGGCTGCTG
CTCAAAGAGCCCATGACTGTGAGCTCAGACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGA
ATGAGCCCCCGGTGCCTCTGGTGGGGAATTGGCGCCCTCCTCAGCCTGTCAAGGGCAGGGTGGTGAGGGC
CTCCTTCAAGTAA

Translation (260 aa):
MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTILNNGKTCRVVF
DDTYDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTFGEALKQPDGI
AVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPFTHFDPSCLFPACRDYWTYHGSFTTPPCEECIVWLL
LKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPVKGRVVRASFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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