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Report for CCDS17238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17238.1 Public Mus musculus 3 Fabp4 23 108 98 CCDS HistoryNCBI Gene:11770Re-query CCDS DB by CCDS ID:17238.1Re-query CCDS DB by GeneID:11770See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029041.5 ENSMUSP00000029041.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029041.5Link to Ensembl Protein Viewer:ENSMUSP00000029041.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029041Re-query CCDS DB by Protein ID:ENSMUSP00000029041
Original member NCBI NM_024406.3 NP_077717.1 Updated not alive Link to Nucleotide Sequence:NM_024406.3Link to Protein Sequence:NP_077717.1Re-query CCDS DB by Nucleotide ID:NM_024406Re-query CCDS DB by Protein ID:NP_077717
Current member NCBI NM_024406.4 NP_077717.1 Accepted alive Link to Nucleotide Sequence:NM_024406.4Link to Protein Sequence:NP_077717.1Re-query CCDS DB by Nucleotide ID:NM_024406Re-query CCDS DB by Protein ID:NP_077717Link to BLAST:NP_077717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077717.1 132 P04117 132 100% 0 0

Chromosomal Locations for CCDS 17238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10204520 10204570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10205241 10205342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10205950 10206122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10208439 10208511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGTGTGATGCCTTTGTGGGAACCTGGAAGCTTGTCTCCAGTGAAAACTTCGATGATTACATGAAAGAAG
TGGGAGTGGGCTTTGCCACAAGGAAAGTGGCAGGCATGGCCAAGCCCAACATGATCATCAGCGTAAATGG
GGATTTGGTCACCATCCGGTCAGAGAGTACTTTTAAAAACACCGAGATTTCCTTCAAACTGGGCGTGGAA
TTCGATGAAATCACCGCAGACGACAGGAAGGTGAAGAGCATCATAACCCTAGATGGCGGGGCCCTGGTGC
AGGTGCAGAAGTGGGATGGAAAGTCGACCACAATAAAGAGAAAACGAGATGGTGACAAGCTGGTGGTGGA
ATGTGTTATGAAAGGCGTGACTTCCACAAGAGTTTATGAAAGGGCATGA

Translation (132 aa):
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDLVTIRSESTFKNTEISFKLGVE
FDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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