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Report for CCDS17164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17164.1 Public Mus musculus 2 Cdh4 23 108 98 CCDS HistoryNCBI Gene:12561Re-query CCDS DB by CCDS ID:17164.1Re-query CCDS DB by GeneID:12561See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000314.12 ENSMUSP00000000314.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000314.12Link to Ensembl Protein Viewer:ENSMUSP00000000314.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000314Re-query CCDS DB by Protein ID:ENSMUSP00000000314
Original member NCBI NM_009867.3 NP_033997.1 Updated not alive Link to Nucleotide Sequence:NM_009867.3Link to Protein Sequence:NP_033997.1Re-query CCDS DB by Nucleotide ID:NM_009867Re-query CCDS DB by Protein ID:NP_033997
Current member NCBI NM_009867.4 NP_033997.1 Accepted alive Link to Nucleotide Sequence:NM_009867.4Link to Protein Sequence:NP_033997.1Re-query CCDS DB by Nucleotide ID:NM_009867Re-query CCDS DB by Protein ID:NP_033997Link to BLAST:NP_033997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033997.1 913 P39038 913 100% 0 0

Chromosomal Locations for CCDS 17164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 179442622 179442678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179444700 179444811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179780254 179780480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179797458 179797628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179842969 179843124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179847220 179847364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179860117 179860289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179874072 179874209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179881810 179881995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179885854 179886107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179886720 179886862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179889089 179889322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179890743 179890976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179893192 179893331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179894028 179894192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179895712 179895918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGACCACAGGCTCTGTGCTGCCGCTGCTGCTGCTCGGGCTCTCGGGCGCGCTCCGGGCCCACCGTGAGG
ATCTTACAGTCAGAGAGGCCTGTAAGGCTGGCTTCTCCGAAGAAGGCTACACTGCGTTGATCTCCCCGAA
TGTCCTGGAAGGAGAGAAACTACTCAAAGTCGAGTTCAGCAGCTGCGTGGGCACCAAAGGTATGCAGTAT
GAGACCAACAGCTTGGACTTCAAAGTCGGGGCGGATGGGACAGTCTTCGCCACTAGGGAGTTGAAGATCC
CCTCAGAGCAGGTGGCCTTTACCGTCACTGCGCGGGAACGCCAGAGTGCTGAGCAATGGGCTGCTATGGT
GCGGCTGCTGGTAGCCCAGACATCGTCAGCACACTCTGAACACAAGAAAGGGCAGACAGTGGCCCTAGAC
CCCTCTCAGCCGCCAAATGACACACTGCTGCCATGGCCTCAACATCAGAGCTCTGGTGGGCTGAGGAGAC
AGAAGCGTGACTGGGTCATCCCACCCATCAACGTTCCCGAGAACTCCCGTGGACCCTTCCCTCAGCAGCT
TGTCAGGATCAGGTCGGACAAAGACAATGACATCCCCATCCGCTACAGCATCACGGGTGTGGGCGCCGAC
CAGCCCCCCATGGAGGTCTTCAACATCGACTCTATGTCTGGCCGGATGTATGTCACTCGGCCCATGGACC
GGGAGGAAAGAGCCTCTTACCATCTCCGAGCCCACGCGGTGGATATGAACGGTAACAAGGTGGAGAATCC
TATTGACCTGTACATCTACGTCATTGACATGAACGACAACCGTCCCGAGTTCATCAACCAGGTCTACAAC
GGCTCTGTGGATGAGGGCTCCAAGCCAGGTACATATGTGATGACCGTCACAGCCAACGATGCAGATGATA
GCACCACAGCCAATGGCATGGTGAGGTACAGAATTGTCACCCAGACACCCCAGAGCCCATCCCAGAATAT
GTTCACCATCAACAGTGAAACAGGGGACATCGTGACCGTGGCAGCAGGCCTGGACAGAGAGAAAGTCCAG
CAGTACACCGTCATCGTCCAGGCCACTGACATGGAAGGAAACCTTAATTATGGTCTCTCGAACACAGCCA
CTGCCATCATCACGGTGACAGACGTAAATGACAACCCTCCGGAATTCACCACAAGCACATTTGCAGGAGA
GGTTCCTGAGAACCGTATAGAGACAGTAGTAGCCAACCTCACGGTGATGGACCGAGACCAGCCCCACTCA
CCCAACTGGAACGCCGTCTACCGAATCATAAGTGGGGACCCCTCTGGGCACTTCAGTGTCCGCACAGACC
CCGTGACCAATGAGGGCATGGTCACCGTGGTGAAGGCAGTGGACTATGAGCTGAACCGTGCCTTCATGCT
GACCGTAATGGTGTCCAACCAGGCGCCCCTGGCCAGTGGGATCCAGATGTCCTTCCAGTCCACAGCAGGG
GTAACCATCTCTGTCACCGATGTCAACGAGGCCCCCTACTTCCCCTCCAACCACAAACTGATCCGCCTGG
AAGAGGGTGTGCCCGCTGGGACAGCACTCACCACTTTTTCTGCAGTGGACCCTGACCGGTTCATGCAGCA
AGCCGTGAGGTACTCCAAACTGTCTGATCCCGCCAACTGGCTGCACATCAACACATCCAATGGGCAGATC
ACCACAGCCGCCATTCTGGACCGAGAGTCCCTCTACACCAAGAACAATGTATATGAGGCCACCTTCCTGG
CTGCTGACAATGGGATCCCCCCAGCCAGTGGCACTGGGACCCTGCAGATCTACCTCATTGATATCAATGA
CAACGCACCACAGCTGCTACCCAAGGAGGCACAGATCTGCGAGAGGCCCGGCCTCAATGCCATCAACATC
ACTGCAGCCGACGCCGATATGGACCCCAACATTGGCCCCTATGTCTTTGAGTTGCCCTTCATCCCCACTA
CAGTGAGGAAGAATTGGACCATCACCCGCCTAAATGGTGACTATGCCCAGCTCAGTCTGAGAATCCTGTA
TCTGGAAGCAGGGGTGTATGACGTCCCCATCATCGTCACAGACTCTGGCAACCCTCCCTTGTCCAATACA
TCTGTCATAAAGGTCAAGGTGTGCCCATGTGATGAGAACGGCGACTGTACCACGGTCGGCGCAGTGGCTG
CAGCTGGCCTGGGCACGGGCGCCATCGTGGCGATCCTCATCTGCATCGTGATCCTGCTAATCATGGTTCT
GCTGTTCGTTGTGTGGATGAAGCGGAGAGAAAAGGAGAGGCACACAAAGCAGCTGCTCATCGACCCTGAG
GATGACGTGAGGGACAACATCCTGAAGTACGATGAAGAGGGCGGTGGCGAGGAGGACCAAGACTACGACC
TCAGCCAGCTGCAACAGCCAGAAGCCATGGAGCATGTGCTGAGCAAAACTCCTGGTGTGCGGCGGGTGGA
TGAACGGCCAGTAGGTGCTGAACCCCAGTACCCAGTCAGGCCTGTGGTGCCACACCCAGGAGACATTGGA
GACTTCATTAATGAGGGACTCCGAGCTGCTGACAATGACCCCACCGCACCCCCCTACGACTCCCTGCTAG
TCTTCGACTATGAAGGCAGCGGTTCTACTGCGGGCTCTGTCAGCTCCCTAAACTCCTCCAGCTCCGGGGA
TCAAGATTACGACTACTTAAATGACTGGGGGCCCCGGTTCAAGAAGCTGGCGGACATGTATGGGGGTGGC
GAGGAGGACTAA

Translation (913 aa):
MTTGSVLPLLLLGLSGALRAHREDLTVREACKAGFSEEGYTALISPNVLEGEKLLKVEFSSCVGTKGMQY
ETNSLDFKVGADGTVFATRELKIPSEQVAFTVTARERQSAEQWAAMVRLLVAQTSSAHSEHKKGQTVALD
PSQPPNDTLLPWPQHQSSGGLRRQKRDWVIPPINVPENSRGPFPQQLVRIRSDKDNDIPIRYSITGVGAD
QPPMEVFNIDSMSGRMYVTRPMDREERASYHLRAHAVDMNGNKVENPIDLYIYVIDMNDNRPEFINQVYN
GSVDEGSKPGTYVMTVTANDADDSTTANGMVRYRIVTQTPQSPSQNMFTINSETGDIVTVAAGLDREKVQ
QYTVIVQATDMEGNLNYGLSNTATAIITVTDVNDNPPEFTTSTFAGEVPENRIETVVANLTVMDRDQPHS
PNWNAVYRIISGDPSGHFSVRTDPVTNEGMVTVVKAVDYELNRAFMLTVMVSNQAPLASGIQMSFQSTAG
VTISVTDVNEAPYFPSNHKLIRLEEGVPAGTALTTFSAVDPDRFMQQAVRYSKLSDPANWLHINTSNGQI
TTAAILDRESLYTKNNVYEATFLAADNGIPPASGTGTLQIYLIDINDNAPQLLPKEAQICERPGLNAINI
TAADADMDPNIGPYVFELPFIPTTVRKNWTITRLNGDYAQLSLRILYLEAGVYDVPIIVTDSGNPPLSNT
SVIKVKVCPCDENGDCTTVGAVAAAGLGTGAIVAILICIVILLIMVLLFVVWMKRREKERHTKQLLIDPE
DDVRDNILKYDEEGGGEEDQDYDLSQLQQPEAMEHVLSKTPGVRRVDERPVGAEPQYPVRPVVPHPGDIG
DFINEGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGDQDYDYLNDWGPRFKKLADMYGGG
EED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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