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Report for CCDS17142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17142.1 Public Mus musculus 2 Zbp1 23 108 98 CCDS HistoryNCBI Gene:58203Re-query CCDS DB by CCDS ID:17142.1Re-query CCDS DB by GeneID:58203See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029018.13 ENSMUSP00000029018.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029018.13Link to Ensembl Protein Viewer:ENSMUSP00000029018.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029018Re-query CCDS DB by Protein ID:ENSMUSP00000029018
Original member Current member NCBI NM_021394.2 NP_067369.2 Accepted alive Link to Nucleotide Sequence:NM_021394.2Link to Protein Sequence:NP_067369.2Re-query CCDS DB by Nucleotide ID:NM_021394Re-query CCDS DB by Protein ID:NP_067369Link to BLAST:NP_067369.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067369.2 411 Q9QY24-1 411 99.7567% 0 1

Chromosomal Locations for CCDS 17142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 173207217 173207226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173207742 173207919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173209028 173209249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173210536 173210733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173212099 173212266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173215677 173215865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173216772 173217008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173218742 173218775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCAGAAGCTCCTGTTGACTTGAGCACAGGAGACAATCTGGAGCAAAAGATCCTGCAGGTGTTGAGCG
ATGACGGCGGCCCTGTGAAGATTGGCCAGCTGGTGAAGAAATGCCAAGTGCCCAAGAAAACCCTCAATCA
AGTCCTTTACCGCCTGAAGAAGGAGGACAGAGTGTCCTCCCCAGAGCCTGCAACATGGAGCATAGGCGGG
GCTGCTTCTGGAGATGGGGCTCCTGCAATCCCTGAGAACTCCAGTGCCCAGCCTAGCCTTGATGAAAGAA
TATTAAGATTCCTGGAAGCCAATGGGCCTCACAGGGCCCTGCACATCGCCAAGGCTCTGGGAATGACGAC
AGCCAAAGAAGTGAACCCACTCCTGTATTCCATGAGAAATAAGCACCTTCTGAGCTATGACGGACAGACG
TGGAAGATCTACCACTCACGTCAGGAAGGCCAAGACATAGCTCATTCTGGAGTCACACAAGAGTCCCCTG
CGATTATTTGTCAGCACAATCCGGTCAACATGATCTGCCAACAAGGAGCCAACAGCCACATCTCCATTGC
CAATTCAAACGCCATCCAGATTGGTCACGGGAATGTCATAGTAAGAGAGAAAGCCTGTGGTGAGCCAGGT
CCCAGGACCTCTCACCCTCTACCCTTGGCATGGGACGCCTCTGCTCAGGACATGCCCCCTGTTGCCCACG
GAGCTCAGTACATCTACATGGACAAGTCCTTGCTCCAACAAGTGCAGCTTGGCCACCACAACGAGATGAG
CCTCGTGGGGGATGCAGGGAAGCACCCCTCTTATAGCTTTTCTGACAGCCCCCCAGAAGTGTCAACCACC
ACTGCTGACCCAGGAGCTTCATTCAACATGCAAACATCTGAGCCAGGCCCTCACCCTGAGGGAGACACAG
TCCAGACAGTCCACATCAAATCCTGCTTTCTAGAGGACGCCACCATTGGTAACGGCAACAAGATGACCAT
CCACCTTAGGTCAAAGGGTGAAGTCATGGAGTCTGGAGACAGTGAAGAGCCGAAGAAGGAAGACACAGGT
ACAAGCTCTGAAGCCACTCCACCCAGAAGCTGCCAGCACACGCCCAGTGACTCCATGCTGCCCACCTCTG
AGCTGAGAGCTATGGCTCTGGGAGACAGTAGCCCCCAGACCACAGAACCTGTGCTTAGAGAGCATGAAGT
CCAGGACATAGAAAGCTCTCAAGACACAGGACTGAGCAAGCAATGA

Translation (411 aa):
MAEAPVDLSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG
AASGDGAPAIPENSSAQPSLDERILRFLEANGPHRALHIAKALGMTTAKEVNPLLYSMRNKHLLSYDGQT
WKIYHSRQEGQDIAHSGVTQESPAIICQHNPVNMICQQGANSHISIANSNAIQIGHGNVIVREKACGEPG
PRTSHPLPLAWDASAQDMPPVAHGAQYIYMDKSLLQQVQLGHHNEMSLVGDAGKHPSYSFSDSPPEVSTT
TADPGASFNMQTSEPGPHPEGDTVQTVHIKSCFLEDATIGNGNKMTIHLRSKGEVMESGDSEEPKKEDTG
TSSEATPPRSCQHTPSDSMLPTSELRAMALGDSSPQTTEPVLREHEVQDIESSQDTGLSKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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