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Report for CCDS17070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17070.1 Public Mus musculus 2 Cd40 23 108 98 CCDS HistoryNCBI Gene:21939Re-query CCDS DB by CCDS ID:17070.1Re-query CCDS DB by GeneID:21939See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073707.8 ENSMUSP00000073386.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073707.8Link to Ensembl Protein Viewer:ENSMUSP00000073386.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073707Re-query CCDS DB by Protein ID:ENSMUSP00000073386
Original member Current member NCBI NM_170702.2 NP_733803.2 Accepted alive Link to Nucleotide Sequence:NM_170702.2Link to Protein Sequence:NP_733803.2Re-query CCDS DB by Nucleotide ID:NM_170702Re-query CCDS DB by Protein ID:NP_733803Link to BLAST:NP_733803.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733803.2 260 P27512-5 260 100% 0 0

Chromosomal Locations for CCDS 17070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165055708 165055758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165062286 165062364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165062661 165062786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165063022 165063168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165063468 165063561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165066503 165066564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165069817 165069848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165070722 165070913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGTGTCTTTGCCTCGGCTGTGCGCGCTATGGGGCTGCTTGTTGACAGCGGTCCATCTAGGGCAGTGTG
TTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACT
GACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACTCAGGCGAATTCTCAGCCCAG
TGGAACAGGGAGATTCGCTGTCACCAGCACAGACACTGTGAACCCAATCAAGGGCTTCGGGTTAAGAAGG
AGGGCACCGCAGAATCAGACACTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGA
GGCATGTGCTCAGCACACGCCCTGTATCCCTGGCTTTGGAGTTATGGAGATGGCCACTGAGACCACTGAT
ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGAAAAGTGTTATCCCT
GGACAAGCTGTGAGGATAAGAACTTGGAGGTCCTACAGAAAGGAACGAGTCAGACTAATGTCATCTGTGA
AAAGGTGGTCAAGAAACCAAAGGATAATGAGATCTTACCCCCTGCGGCTCGACGGCAAGATCCCCAGGAG
ATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCA
CACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAG
GCCCCTGGTCTGA

Translation (260 aa):
MVSLPRLCALWGCLLTAVHLGQCVTCSDKQYLHDGQCCDLCQPGSRLTSHCTALEKTQCHPCDSGEFSAQ
WNREIRCHQHRHCEPNQGLRVKKEGTAESDTVCTCKEGQHCTSKDCEACAQHTPCIPGFGVMEMATETTD
TVCHPCPVGFFSNQSSLFEKCYPWTSCEDKNLEVLQKGTSQTNVICEKVVKKPKDNEILPPAARRQDPQE
MEDYPGHNTAAPVQETLHGCQPVTQEDGKESRISVQERQVTDSIALRPLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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