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Report for CCDS17002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17002.1 Public Mus musculus 2 Srsf6 23 108 98 CCDS HistoryNCBI Gene:67996Re-query CCDS DB by CCDS ID:17002.1Re-query CCDS DB by GeneID:67996See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130411.6 ENSMUSP00000119065.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130411.6Link to Ensembl Protein Viewer:ENSMUSP00000119065.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130411Re-query CCDS DB by Protein ID:ENSMUSP00000119065
Original member Current member NCBI NM_026499.4 NP_080775.3 Accepted alive Link to Nucleotide Sequence:NM_026499.4Link to Protein Sequence:NP_080775.3Re-query CCDS DB by Nucleotide ID:NM_026499Re-query CCDS DB by Protein ID:NP_080775Link to BLAST:NP_080775.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080775.3 339 Q3TWW8 339 100% 0 0

Chromosomal Locations for CCDS 17002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 162931671 162931777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162931994 162932142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162933426 162933550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162933654 162933862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162934228 162934311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162934412 162934757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGCCGCGCGTCTACATAGGACGCCTGAGCTACAACGTCCGCGAGAAGGACATCCAGCGCTTTTTCAGCG
GCTACGGCCGCCTCCTCGAGATCGACCTCAAAAATGGGTACGGTTTCGTGGAGTTCGAGGACTCCCGGGA
TGCCGACGATGCCGTGTACGAGCTCAACAGCAAGGAGCTGTGCGGCGAGCGCGTGATCGTAGAGCACGCC
CGGGGCCCGCGCCGCGACCGCGATGGCTACAGCTACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTC
GGAGAACTTCTGGCAGAGACAAATATGGACCACCTGTTCGTACAGAGTACAGGCTTATTGTAGAAAATCT
GTCTAGTCGTTGCAGTTGGCAAGACTTAAAGGATTTCATGCGGCAAGCAGGAGAAGTGACTTATGCAGAT
GCTCACAAAGAACGAACAAATGAGGGTGTGATTGAATTTAGATCCTACTCCGACATGAAGCGTGCTTTGG
ATAAACTGGATGGTACAGAAATAAATGGCAGAAATATTAGGCTTATTGAAGATAAGCCAAGAACAAGCCA
TAGGCGCTCCTACTCTGGCAGTAGATCCAGATCACGGTCTAGAAGAAGGTCTCGGAGTAGGAGTCGCAGA
AGCAGCCGCAGTAGATCTCGAAGTATCTCAAAAAGTCGCTCCCGATCTAGGTCTCGGAGCAAAGGTCGAT
CCCGATCCCGCTCAAAAGGCAGGAAATCCAGATCAAAGAGCAAATCGAAGCCCAAGTCTGACCGGGGCTC
CCATTCCCACTCAAGAAGCAGGTCTAAGGATAAGTATGGGAAGTCACGTAGTAGGTCACGGTCTCGGTCC
CCCAAAGAGAACGGCAAAGGAGACATAAAGTCAAAGTCCAGATCCCGGAGCCAGTCTCGGTCCCACTCGC
CTCTACCTGCTCCACCCTCAAAGGCTCGGTCCATGTCCCCTCCGCCAAAAAGAGCTTCAAGGTCCCGTTC
TAGATCTCGTTCAAGGTCCAGATCAAGTTCCAGAGATTAA

Translation (339 aa):
MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA
RGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYAD
AHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRR
SSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDKYGKSRSRSRSRS
PKENGKGDIKSKSRSRSQSRSHSPLPAPPSKARSMSPPPKRASRSRSRSRSRSRSSSRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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