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Report for CCDS16969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16969.1 Public Mus musculus 2 Tgif2 23 108 98 CCDS HistoryNCBI Gene:228839Re-query CCDS DB by CCDS ID:16969.1Re-query CCDS DB by GeneID:228839See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081335.12 ENSMUSP00000096745.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081335.12Link to Ensembl Protein Viewer:ENSMUSP00000096745.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081335Re-query CCDS DB by Protein ID:ENSMUSP00000096745
Original member Current member NCBI NM_173396.3 NP_775572.1 Accepted alive Link to Nucleotide Sequence:NM_173396.3Link to Protein Sequence:NP_775572.1Re-query CCDS DB by Nucleotide ID:NM_173396Re-query CCDS DB by Protein ID:NP_775572Link to BLAST:NP_775572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775572.1 237 Q8C0Y1 237 100% 0 0

Chromosomal Locations for CCDS 16969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156844190 156844381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156853129 156853650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGTCGGACAGCGATCTAGGCGAGGATGAGGGGCTCCTGTCACTGACCGGCAAGAGGAAGCGCAGAGGGA
ACCTGCCCAAGGAGTCAGTAAAGATCCTCCGGGACTGGCTCTATCTGCACCGCTACAACGCCTACCCCTC
AGAGCAGGAGAAGCTAAGTCTCTCTGGACAGACCAACCTCTCGGTGCTGCAGATATGTAACTGGTTCATC
AATGCCCGTCGTCGCCTTCTCCCTGACATGCTTCGGAAGGATGGCAAAGACCCTAATCAGTTCACCATCT
CCCGTCGTGGGGGTAAGGCCTCTGATGTGGCTCTCCCCAGGGGCAGCAGCCCCTCTCTGCTGGCTGTGTC
TGTTCCAGCCCCCACTAACATGCTCTCCTTGTCTGTGTGCTCCATGCCACTCCACTCAGGCCAAGGTGAA
AAGCCAGCAGCACCCTTCCCACAAGTGGAGCTGGAATCCCCCAAGGCCCTGGTGACCCCTGCTAGCACAC
TCACCCTGCTGACTAGGGCAGAGGCTGGAAGCCCCACGGGTGGACTCTTCAATACGCCACCACCCACACC
CCCAGAGCAGGACAAGGATGACTTCAGCAGCTTCCAGTTGCTGGTGGAGGTGGCGCTGCAGAGGGCTGCC
GAGATGGAGCTTCAGAAGCAGCAAGAGCCAGCGCCACCTTTGCTACACACTCCGCTGCCTTTCGTCTCAG
AAAACGCCAAGTAG

Translation (237 aa):
MSDSDLGEDEGLLSLTGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNLSVLQICNWFI
NARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSLLAVSVPAPTNMLSLSVCSMPLHSGQGE
KPAAPFPQVELESPKALVTPASTLTLLTRAEAGSPTGGLFNTPPPTPPEQDKDDFSSFQLLVEVALQRAA
EMELQKQQEPAPPLLHTPLPFVSENAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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