NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16968.1 Public Mus musculus 2 Dlgap4 23 108 98 CCDS HistoryNCBI Gene:228836Re-query CCDS DB by CCDS ID:16968.1Re-query CCDS DB by GeneID:228836See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169464.8 ENSMUSP00000126980.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169464.8Link to Ensembl Protein Viewer:ENSMUSP00000126980.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169464Re-query CCDS DB by Protein ID:ENSMUSP00000126980
Original member Current member NCBI NM_146128.6 NP_666240.4 Accepted alive Link to Nucleotide Sequence:NM_146128.6Link to Protein Sequence:NP_666240.4Re-query CCDS DB by Nucleotide ID:NM_146128Re-query CCDS DB by Protein ID:NP_666240Link to BLAST:NP_666240.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666240.4 992 B1AZP2-1 992 100% 0 0

Chromosomal Locations for CCDS 16968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156700679 156701674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156704410 156704654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156705856 156705970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156707078 156707128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156711021 156711261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156745835 156746196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156748332 156748420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156748944 156749356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156760851 156760942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156761773 156761928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156762685 156762903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2979 nt):
ATGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGACAGCCTGGACCCACCTCACGAGCCCCTCT
TTGCTGGACCTGACCGAAACCCCTACCTGCTGTCGCCCACCGAGGCCTTTGCCCGGGAAGCCCGCTTCCC
CGGGCAAAACACACTGCCGGGGGATGGGCTCTTCCCACTCAACAACCAGCTGCCCCCACCAAGCAGCACC
TTCCCCCGAATCCACTACAACTCCCACTTTGAGGTGCCCGAGGAAAGCCCATTCCCCAGCCACGCCCAAG
CCACTAAGATCAATCGGCTGCCCGCCAACCTCCTGGACCAGTTTGAGAAACAACTGCCTATCCACCGAGA
TGGCTTCAGCACCCTCCAGTTCCCCCGGGGGGAGGCCAAGGCCAGGGGTGAGAGTCCAGGCCGCATTCGC
CACCTGGTCCACTCTGTCCAGCGTCTCTTCTTCACTAAGGCACCCTCCATGGAGGGCACCGCGGGCAAGG
TGGGTGGCAATGGCAGCAAGAAAGGTGGCCTGGAGGACGGAAAAGGCCGGAGGGCCAAAAGCAAGGAACG
GGCCAAGGCTGGGGAGCCCAAACGGCGAAGCCGCTCCAACATCTCAGGCTGGTGGAGTTCAGATGACAAC
TTGGACGGTGAGGGTGGTGCCTTCCGCAGTGGCCCTGCCTCGGGGCTGATGACTCTGGGCCGCCAGCAAG
AACGCACCCAGCCCCGCTACTTCATGCACGCCTACAACACCATCAGTGGGCACATGCTCAAAACCACCAA
GAACACTACCACCGAGCTGACTGCCCCGCCGCCCCCGCCTGCTCCCCCTGCTACCTGTCCCAGCCTTGGA
GTGGGCACCGACACCAACTATGTCAAACGTGGTTCCTGGTCCACTCTGACCCTCAGTCATGCCCATGAGG
TCTGCCAGAAGACCTCAGCCACTTTGGATAAGAGCCTGCTCAAGTCCAAATCCTGCCACCAGGGTTTGGC
CTACCATTACCTGCAGGTGCCCGGCGGAGGGGGAGAGTGGAGCACCACGCTGCTATCCCCTCGAGACATG
GATAGCACCGCTGAGGGGCCCATCCCGTGCCGGCGCATGCGCAGTGGCAGCTATATCAAGGCCATGGGCG
ATGAAGACAGTGATGAGTCTGGGGGTGGTAGCCCCAAACCTTCACCCAAGACTGCAGCGCGGCGTCAGAG
CTACCTGAGGGCTACGCAGCAGTCCCTGGGAGAGCAGAGCAACCCTCGACGGAGTTTGGACCGCTTGGAT
TCAGTGGACATGCTGCTGCCTTCCAAGTGCCCCAGCTGGGAAGACGACTACAACCCCATCAGTGACAGCC
TCAATGACTCCAGCTGTATCAGCCAGGTTTTTGGACAGGCTTCCCTGATCCCCCAGTTGTTTGGCCATGA
TCAACAGGTCCGGGAGGCAGATCTGAGCGACCAGTACGAGGCAGCCTGCGAGTCGGCCTGCAGTGAGGCC
GAGTCTACAACCGCAGAGGCACTCGACTTGCCGCTGCCCAGCTACTTCCGCTCACGCAGCCACAGCTACC
TGCGAGCCATCCAGGCAGGCTGCTCGCAAGAGGAGGACAGTGTCTCCCTGCAGTCCCTCTCCCCACCGCC
CAGCACTGGCAGCCTCAGCAACAGTCGCACGCTTCCAAGTTCATCATGCCTAGTGGCATATAAGAAGACC
CCACCACCGGTCCCTCCACGAACCACATCGAAACCGTTCATCTCAGTCACCGTCCAGAGCAGTACTGAGT
CTGCTCAGGATACCTACCTGGACAGTCAAGACCACAAGAGCGAAGTGACGAGCCAGTCGGGCTTGAGCAA
CTCATCAGACAGCCTGGACAGCAGTACCCGGCCACCCAGTGTGACACGGGGTGGAATTACCCCAGGCCCT
GAAGCTCCGGAGCCACCCCCTAAGCATGCAGCTCTGAAGAGTGAACAAGGGACACTGACGAGCTCTGAGT
CCCATTCCGAGGCCATCCCCAAAAGGAAACTGTCATCGATAGGAATACAAGTTGACTGCATTCAGCCAGT
GCCAAAAGAGGAGCCCAGTCCCGCTACCAAATTCCAGTCCATCGGGATTCAGGTAGAGGACGACTGGCGA
AGCAGTGCCCCCTCTCACAGCATGTCCTCCCGTCGGGACACTGACTCTGATACCCAGGATGCCAACGACT
CCAGTTGTAAGTCATCTGAGAGGAGTCTCCCAGACTGTACCTCACACCCCAATTCCATCAGCATTGATGC
TGGCCCCCGACAGGCCCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCT
GCCCTGGAGGCGTCTTCGCTGCCCCCACCCGACCCTTGGCTGGAGACTTCCTCCAGCTCCCCAGCAGAGC
CCGCTCAGCCAGGGGCCTGCCGCAGGGATGGCTACTGGTTCCTGAAGCTCCTTCAGGCAGAAACGGAGAG
ACTGGAAGGCTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGAAGAAGTCTTAGGG
AAAGTTCTCAGTGCTGTGGGCAGCGCCCAGCTCCTGATGTCCCAGAAATTCCAGCAGTTCCGCGGCCTCT
GTGAGCAGAACTTGAACCCTGATGCCAACCCCCGTCCGACAGCCCAGGACCTGGCAGGGTTCTGGGACCT
GCTGCAGCTGTCCATTGAGGACATCAGCATGAAGTTCGATGAGCTCTACCACCTCAAGGCCAACAGCTGG
CAGCTGGTGGAGACCCCCGAGAAGAGGAAGGAAGAGAAGAAGCCACCCCCTCCAGTCCCGAAGAAGCCAG
CCAAATCCAAGGCGGCAGTGAGCCGCGACAAGGCCTCAGACGCGGGGGACAAGCAGCGTCAGGAGGCCAG
AAAGAGACTCCTGGCCGCCAAGCGAGCAGCGTCTGTGCGGCAGAACTCGGCCACAGAGAGTGCGGACAGC
ATCGAGATTTATGTCCCCGAGGCCCAGACCAGGCTCTAA

Translation (992 aa):
MKGLGDSRPRHLSDSLDPPHEPLFAGPDRNPYLLSPTEAFAREARFPGQNTLPGDGLFPLNNQLPPPSST
FPRIHYNSHFEVPEESPFPSHAQATKINRLPANLLDQFEKQLPIHRDGFSTLQFPRGEAKARGESPGRIR
HLVHSVQRLFFTKAPSMEGTAGKVGGNGSKKGGLEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDN
LDGEGGAFRSGPASGLMTLGRQQERTQPRYFMHAYNTISGHMLKTTKNTTTELTAPPPPPAPPATCPSLG
VGTDTNYVKRGSWSTLTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVPGGGGEWSTTLLSPRDM
DSTAEGPIPCRRMRSGSYIKAMGDEDSDESGGGSPKPSPKTAARRQSYLRATQQSLGEQSNPRRSLDRLD
SVDMLLPSKCPSWEDDYNPISDSLNDSSCISQVFGQASLIPQLFGHDQQVREADLSDQYEAACESACSEA
ESTTAEALDLPLPSYFRSRSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKT
PPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGITPGP
EAPEPPPKHAALKSEQGTLTSSESHSEAIPKRKLSSIGIQVDCIQPVPKEEPSPATKFQSIGIQVEDDWR
SSAPSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTSHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDP
ALEASSLPPPDPWLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLG
KVLSAVGSAQLLMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSW
QLVETPEKRKEEKKPPPPVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQNSATESADS
IEIYVPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH