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Report for CCDS16939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16939.1 Public Mus musculus 2 Raly 23 108 98 CCDS HistoryNCBI Gene:19383Re-query CCDS DB by CCDS ID:16939.1Re-query CCDS DB by GeneID:19383See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058089.12 ENSMUSP00000058105.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058089.12Link to Ensembl Protein Viewer:ENSMUSP00000058105.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058089Re-query CCDS DB by Protein ID:ENSMUSP00000058105
Original member Current member EBI ENSMUST00000109701.9 ENSMUSP00000105323.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109701.9Link to Ensembl Protein Viewer:ENSMUSP00000105323.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109701Re-query CCDS DB by Protein ID:ENSMUSP00000105323
Original member NCBI NM_001139511.1 NP_001132983.1 Updated not alive Link to Nucleotide Sequence:NM_001139511.1Link to Protein Sequence:NP_001132983.1Re-query CCDS DB by Nucleotide ID:NM_001139511Re-query CCDS DB by Protein ID:NP_001132983
Current member NCBI NM_001139511.2 NP_001132983.1 Accepted alive Link to Nucleotide Sequence:NM_001139511.2Link to Protein Sequence:NP_001132983.1Re-query CCDS DB by Nucleotide ID:NM_001139511Re-query CCDS DB by Protein ID:NP_001132983Link to BLAST:NP_001132983.1
Original member NCBI NM_001139512.1 NP_001132984.1 Updated not alive Link to Nucleotide Sequence:NM_001139512.1Link to Protein Sequence:NP_001132984.1Re-query CCDS DB by Nucleotide ID:NM_001139512Re-query CCDS DB by Protein ID:NP_001132984
Current member NCBI NM_001139512.2 NP_001132984.1 Accepted alive Link to Nucleotide Sequence:NM_001139512.2Link to Protein Sequence:NP_001132984.1Re-query CCDS DB by Nucleotide ID:NM_001139512Re-query CCDS DB by Protein ID:NP_001132984Link to BLAST:NP_001132984.1
Original member NCBI NM_023130.3 NP_075619.2 Updated not alive Link to Nucleotide Sequence:NM_023130.3Link to Protein Sequence:NP_075619.2Re-query CCDS DB by Nucleotide ID:NM_023130Re-query CCDS DB by Protein ID:NP_075619
Current member NCBI NM_023130.4 NP_075619.2 Accepted alive Link to Nucleotide Sequence:NM_023130.4Link to Protein Sequence:NP_075619.2Re-query CCDS DB by Nucleotide ID:NM_023130Re-query CCDS DB by Protein ID:NP_075619Link to BLAST:NP_075619.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132983.1 296 Q64012-2 296 100% 0 0
NP_001132984.1 296 Q64012-2 296 100% 0 0
NP_075619.2 296 Q64012-2 296 100% 0 0

Chromosomal Locations for CCDS 16939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154857278 154857533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154859678 154859750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154861840 154862006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154863550 154863663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154863814 154864049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154865908 154865952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGTCCTTGAAGATTCAGACCAGCAATGTAACCAACAAGAATGACCCTAAGTCCATCAACTCTCGGGTCT
TCATCGGAAATCTAAACACAGCTGTGGTGAAGAAGTCAGATGTGGAGACCATCTTTTCCAAGTACGGCCG
AGTGGCTGGTTGCTCTGTGCACAAAGGCTATGCTTTTGTCCAGTATGCCAATGAGCGCCATGCCCGGGCA
GCTGTGCTGGGAGAGAATGGGCGGGTGCTGGCTGGACAGACCCTGGACATCAACATGGCTGGAGAGCCCA
AGCCTAATAGACCCAAGGGGCTAAAGAGAGCAGCAACTGCCATCTACAGGCTGTTTGATTATCGAGGCCG
CCTTTCTCCAGTGCCTGTGCCCAGGGCAGTTCCGGTGAAGCGACCCCGTGTTACAGTCCCTTTGGTTCGC
CGTGTCAAAACTACGATACCTGTCAAGCTCTTTGCCCGCTCCACAGCTGTCACTACTGGCTCAGCCAAAA
TCAAGTTAAAGAGCAGTGAGCTACAGACCATCAAAACAGAGCTGACACAGATCAAGTCCAACATCGATGC
CCTGTTGGGTCGCTTGGAACAGATTGCTGAGGAACAGAAGGCCAACCCAGATGGCAAGAAGAAGGGTGAC
AGCAGCAGTGGTGGAGGAGGAGGCAGCAGTGGTGGAGGCGGCAGTAGCAATGTTGGTGGTGGCAGCAGCG
GCGGCAGCGGGAGCTGCAGCAGCAGCAGCCGGCTACCAGCGCCCCAAGAAGACACGGCTTCTGAGGCAGG
CACACCCCAAGGAGAAGTCCAAACTCGAGATGATGGTGATGAGGAGGGACTGCTAACACATAGCGAGGAG
GAGCTGGAGCACAGCCAGGACACAGATGCAGAAGATGGAGCCTTGCAGTAA

Translation (296 aa):
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARA
AVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVR
RVKTTIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGD
SSSGGGGGSSGGGGSSNVGGGSSGGSGSCSSSSRLPAPQEDTASEAGTPQGEVQTRDDGDEEGLLTHSEE
ELEHSQDTDAEDGALQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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