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Report for CCDS16857.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16857.2 Public Mus musculus 2 Cst7 23 108 98 CCDS HistoryNCBI Gene:13011Re-query CCDS DB by CCDS ID:16857.2Re-query CCDS DB by GeneID:13011See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16857.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available conservation and publication data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 16857.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089200.2 ENSMUSP00000086606.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089200.2Link to Ensembl Protein Viewer:ENSMUSP00000086606.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089200Re-query CCDS DB by Protein ID:ENSMUSP00000086606
Original member Current member NCBI NM_009977.3 NP_034107.2 Accepted alive Link to Nucleotide Sequence:NM_009977.3Link to Protein Sequence:NP_034107.2Re-query CCDS DB by Nucleotide ID:NM_009977Re-query CCDS DB by Protein ID:NP_034107Link to BLAST:NP_034107.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034107.2 144 O89098 144 100% 0 0

Chromosomal Locations for CCDS 16857.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150570519 150570585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150575704 150575876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150577656 150577772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150578420 150578497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGTGGCTGGCCATTCTGCTTGCCCTCTGCTGCCTAACTTCTGACACCCATGGGGCACGCCCCCCAGATT
TTTGTTCCAAAGATTTGATCTCCAGTGTGAAGCCAGGATTCCCCAAAACAATAGAGACCAATAACCCAGG
AGTGCTTAAGGCCGCCAGGCACAGTGTGGAAAAGTTCAACAACTGCACAAATGACATCTTTTTGTTCAAG
GAGTCCCATGTCAGCAAAGCCCTGGTACAGGTGGTGAAAGGCCTGAAATATATGCTGGAGGTGAAAATCG
GCCGAACTACATGCAGGAAGACCATGCATCACCAACTGGACAACTGTGACTTCCAAACCAACCCTGCCTT
GAAGCGGACTCTATATTGCTACTCTGAAGTCTGGGTCATCCCCTGGCTCCACAGTTTTGAGGTGCCTGTT
CTCCTCTGCCAGTGA

Translation (144 aa):
MWLAILLALCCLTSDTHGARPPDFCSKDLISSVKPGFPKTIETNNPGVLKAARHSVEKFNNCTNDIFLFK
ESHVSKALVQVVKGLKYMLEVKIGRTTCRKTMHHQLDNCDFQTNPALKRTLYCYSEVWVIPWLHSFEVPV
LLCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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