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Report for CCDS16820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16820.1 Public Mus musculus 2 Polr3f 23 108 98 CCDS HistoryNCBI Gene:70408Re-query CCDS DB by CCDS ID:16820.1Re-query CCDS DB by GeneID:70408See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028914.8 ENSMUSP00000028914.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028914.8Link to Ensembl Protein Viewer:ENSMUSP00000028914.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028914Re-query CCDS DB by Protein ID:ENSMUSP00000028914
Original member Current member NCBI NM_029763.3 NP_084039.2 Accepted alive Link to Nucleotide Sequence:NM_029763.3Link to Protein Sequence:NP_084039.2Re-query CCDS DB by Nucleotide ID:NM_029763Re-query CCDS DB by Protein ID:NP_084039Link to BLAST:NP_084039.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084039.2 316 Q921X6 316 100% 0 0

Chromosomal Locations for CCDS 16820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144527864 144527925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144528703 144528820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144532354 144532421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144533158 144533225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144534299 144534411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144535941 144536084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144536283 144536390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144537166 144537357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144538612 144538689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCGGAGGTGAAGGTCAAGGTGCAGCCGCCGGACGCGGATCCGGTGGAGATAGAAAACAGAATTATAG
AATTATGCCACCAGTTCCCTCATGGAATCACAGATCAAGTAATTCAGAACGAAATGCCTCACATTGAAGC
CCAGCAGCGGGCAGTGGCCATCAATAGACTGTTATCCATGGGTCAGTTGGATCTTTTAAGGAGTAACACA
GGCCTCTTATATAGAATAAAGGATTCTCAGAATGCTGGTAAAATGAAGGGGTCCGATAACCAGGAAAAAC
TGGTCTATCAAATCATAGAGGATGCAGGGAATAAAGGAATATGGAGCAGAGATATTCGGTACAAAAGTAA
CTTGCCGTTAACAGAAATCAACAAAATTCTCAAGAATTTGGAAAGTAAAAAGCTAATTAAAGCCGTGAAG
TCTGTAGCAGCTTCCAAAAAGAAGGTTTATATGCTCTATAACCTGCAGCCAGACCGATCTGTGACTGGCG
GTGCCTGGTACAGTGACCAGGATTTTGAATCTGAATTTGTTGAGGTGCTTAATCAACAGTGTTTCAAATT
CCTACAAAGCAAGGCAGAGACAGCAAGAGAAAGTAAACAGAATCCAGTGATACAAAGAAATAGTTCATTT
GCATCGTCACATGAAGTCTGGAAGTACATCTGTGAGCTGGGCATCAGCAAGGTAGAGTTGTCCATGGAGG
ACATTGAAACCATCTTGAACACACTCATTTATGATGGCAAAGTGGAGATGACTATCATTGCTGCGAAGGA
AGGCACTGTTGGCAGCGTAGATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACA
GGCGTGGTCCGGGCACCCTGTGGACTCTGCCCCGTTTTTGAGGACTGCCATGAAGGTGGTGAGATTTCGC
CGTCTAATTGTATTTACATGACAGAGTGGCTTGAATTTTAA

Translation (316 aa):
MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT
GLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVK
SVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSF
ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPT
GVVRAPCGLCPVFEDCHEGGEISPSNCIYMTEWLEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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