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Report for CCDS16810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16810.1 Public Mus musculus 2 Pcsk2 23 108 98 CCDS HistoryNCBI Gene:18549Re-query CCDS DB by CCDS ID:16810.1Re-query CCDS DB by GeneID:18549See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028905.9 ENSMUSP00000028905.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028905.9Link to Ensembl Protein Viewer:ENSMUSP00000028905.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000028905Re-query CCDS DB by Protein ID:ENSMUSP00000028905
Original member Current member NCBI NM_008792.4 NP_032818.1 Accepted alive Link to Nucleotide Sequence:NM_008792.4Link to Protein Sequence:NP_032818.1Re-query CCDS DB by Nucleotide ID:NM_008792Re-query CCDS DB by Protein ID:NP_032818Link to BLAST:NP_032818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032818.1 637 P21661 637 100% 0 0

Chromosomal Locations for CCDS 16810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143546491 143546664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143573443 143573547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143687564 143687677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143690327 143690435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143696657 143696694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143749125 143749201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143773901 143773989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143784528 143784703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143793089 143793304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143795944 143796044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143801004 143801231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143813325 143813811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGGAGGGCGGTTGTGGATCCCAGTGGAAGGCGGCCGGGTTCCTCTTCTGTGTGATGGTTTTTGCGTCTG
CCGAGAGACCCGTCTTCACGAATCATTTTCTTGTGGAGTTGCATAAAGACGGAGAGGAAGAGGCTCGCCA
AGTTGCAGCAGAACACGGCTTTGGAGTCCGAAAGCTCCCCTTTGCAGAAGGCCTGTATCACTTTTATCAC
AATGGGCTTGCAAAGGCCAAAAGAAGACGCAGCCTACACCATAAGCGGCAGCTAGAGAGAGACCCCAGGA
TAAAGATGGCGCTGCAACAAGAAGGATTTGACCGTAAAAAGAGAGGGTACAGGGACATCAATGAGATTGA
CATCAACATGAATGATCCTCTCTTTACAAAGCAATGGTACCTGTTCAACACTGGGCAAGCCGATGGAACT
CCTGGGCTAGACTTGAACGTGGCCGAAGCCTGGGAGCTGGGATACACAGGAAAAGGAGTGACCATTGGAA
TTATGGATGATGGAATTGACTATCTCCACCCAGACCTGGCCTACAACTACAACGCTGATGCAAGTTATGA
CTTCAGCAGCAATGACCCCTACCCATACCCTCGATACACAGATGACTGGTTCAACAGCCATGGAACTAGG
TGTGCAGGAGAAGTTTCTGCTGCAGCCAGCAACAATATCTGTGGAGTCGGCGTAGCATACAACTCCAAGG
TGGCAGGGATCCGGATGCTGGACCAGCCCTTTATGACAGACATCATCGAAGCCTCCTCCATCAGCCACAT
GCCTCAACTGATCGACATCTACAGTGCAAGCTGGGGCCCCACAGACAATGGGAAGACGGTTGATGGGCCC
CGAGAGCTCACACTCCAGGCCATGGCTGATGGCGTGAACAAGGGCCGTGGGGGCAAAGGCAGCATCTATG
TGTGGGCCTCTGGGGACGGTGGCAGCTACGATGACTGCAACTGTGACGGCTATGCTTCAAGCATGTGGAC
CATCTCCATCAACTCAGCCATCAATGATGGCAGGACTGCCTTGTATGATGAGAGTTGCTCTTCCACCTTA
GCATCCACCTTCAGCAATGGGAGGAAGAGGAATCCTGAGGCTGGTGTGGCTACCACAGACTTGTATGGCA
ACTGTACTCTGAGACACTCTGGGACATCTGCAGCTGCTCCGGAGGCAGCTGGCGTGTTTGCATTAGCTTT
GGAGGCTAACCTGGATCTGACCTGGAGAGACATGCAACATCTGACTGTGCTCACCTCCAAGCGGAACCAG
CTTCATGATGAGGTTCATCAGTGGCGACGGAATGGGGTTGGCCTGGAATTTAATCACCTCTTTGGCTACG
GAGTCCTTGATGCAGGTGCCATGGTGAAAATGGCTAAAGACTGGAAAACTGTTCCGGAGAGATTCCATTG
TGTGGGAGGCTCTGTGCAGAACCCTGAAAAAATACCACCCACCGGCAAGCTGGTACTGACCCTCAAAACA
AATGCATGTGAGGGGAAGGAAAACTTCGTCCGCTACCTGGAGCACGTCCAAGCTGTCATCACAGTCAACG
CGACCAGGAGAGGAGACCTGAACATCAACATGACCTCCCCAATGGGCACCAAGTCCATTTTGCTGAGCCG
GCGTCCCAGAGACGACGACTCCAAGGTGGGCTTTGACAAGTGGCCTTTCATGACCACCCACACCTGGGGG
GAGGATGCCCGAGGGACCTGGACCCTGGAGCTGGGGTTTGTGGGCAGTGCACCACAGAAGGGGTTGCTGA
AGGAATGGACCCTGATGCTTCACGGCACACAGAGCGCCCCATACATCGATCAGGTGGTGAGGGATTACCA
GTCTAAGCTGGCCATGTCCAAGAAGCAGGAGCTGGAGGAAGAGCTGGATGAGGCTGTGGAGAGAAGCCTG
CAAAGTATCCTGAGAAAGAACTAG

Translation (637 aa):
MEGGCGSQWKAAGFLFCVMVFASAERPVFTNHFLVELHKDGEEEARQVAAEHGFGVRKLPFAEGLYHFYH
NGLAKAKRRRSLHHKRQLERDPRIKMALQQEGFDRKKRGYRDINEIDINMNDPLFTKQWYLFNTGQADGT
PGLDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYTDDWFNSHGTR
CAGEVSAAASNNICGVGVAYNSKVAGIRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGP
RELTLQAMADGVNKGRGGKGSIYVWASGDGGSYDDCNCDGYASSMWTISINSAINDGRTALYDESCSSTL
ASTFSNGRKRNPEAGVATTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLDLTWRDMQHLTVLTSKRNQ
LHDEVHQWRRNGVGLEFNHLFGYGVLDAGAMVKMAKDWKTVPERFHCVGGSVQNPEKIPPTGKLVLTLKT
NACEGKENFVRYLEHVQAVITVNATRRGDLNINMTSPMGTKSILLSRRPRDDDSKVGFDKWPFMTTHTWG
EDARGTWTLELGFVGSAPQKGLLKEWTLMLHGTQSAPYIDQVVRDYQSKLAMSKKQELEEELDEAVERSL
QSILRKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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