NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16736.1 Public Mus musculus 2 Tmc2 23 108 98 CCDS HistoryNCBI Gene:192140Re-query CCDS DB by CCDS ID:16736.1Re-query CCDS DB by GeneID:192140See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077988.7 ENSMUSP00000077139.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077988.7Link to Ensembl Protein Viewer:ENSMUSP00000077139.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000077988Re-query CCDS DB by Protein ID:ENSMUSP00000077139
Original member Current member EBI ENSMUST00000166774.2 ENSMUSP00000125843.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166774.2Link to Ensembl Protein Viewer:ENSMUSP00000125843.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166774Re-query CCDS DB by Protein ID:ENSMUSP00000125843
Original member Current member NCBI NM_138655.1 NP_619596.1 Accepted alive Link to Nucleotide Sequence:NM_138655.1Link to Protein Sequence:NP_619596.1Re-query CCDS DB by Nucleotide ID:NM_138655Re-query CCDS DB by Protein ID:NP_619596Link to BLAST:NP_619596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619596.1 888 Q8R4P4 888 100% 0 0

Chromosomal Locations for CCDS 16736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130196543 130196576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130201882 130202194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130208284 130208436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130214566 130214656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130225795 130225876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130226235 130226341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130229133 130229231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130232268 130232410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130234778 130234925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130240069 130240257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130241484 130241663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130242994 130243143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130244498 130244626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130247915 130247982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130248622 130248861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130256093 130256218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130260169 130260247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130261277 130261394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130264000 130264217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGAGCCCCCAGTTAAAGAGCTTGGACGAGGAAGGTGACAAGTCAGCAAGGAGACCCACAAGGAAACAAA
CCTCCAGAGCTGCATGTCCCCAAGACGGGCACCGAGCCCAATCTAGCCGGAAGGATCCTGCTAAGGGTAG
CCCAAGACCAGGGTCTTCCCGGAAGAAACAGATGGAACATGGAAGCTATCACAAGGGGTTGCAGGGACAG
AAACCACGAAAGGTGGAGAGGTCTCTACAGGGGAGGAAGAAGGACCGGAGAACTTCCCTTAAGGAGCAGA
GAGCATCTCCAAAGAAGGAGAGGGAGGCTCTGAGGAAGGAGGCAGGCAAGCAGCTGAGAAAACCCAGGTC
CACTTCCTTGGGCTCCAGTGTCTCTACTGGAGACTCCCTGTCTGAGGAGGAGCTGGCTCAGATCCTGGAA
CAGGTAGAAGAAAAAAAGAAGCTCATCACTACCGTGAGGAACAAACCCTGGCCCATGGCAAAGAAGCTGA
GGGAACTCAGGGAAGCCCAAGCCTTTGTGGAGAAGTATGAAGGAGCCTTGGGGAAAGGCAAGGGCAAACA
CCTCTACGCCTACAGGATGATGATGGCTAAGAAATGGGTCAAGTTTAAGAGGGACTTTGATAATTTCAAG
ACTCAATGTATTCCCTGGGAAATGAAGATCAAGGACATTGAAAGTCACTTCGGTTCTTCTGTGGCATCTT
ACTTCATCTTTCTCCGATGGATGTATGGAGTTAACCTTGTCCTTTTTGGCTTAATATTTGGTCTAGTCAT
CATCCCAGAGGTGCTGATGGGCATGCCCTATGGAAGTATACCCAGAAAGACGGTGCCTCGAGCTGAGGAA
GAGCGAGCCATGGACTTCTCTGTCCTTTGGGATTTTGAGGGCTACATCAAATATTCTGCTCTCTTCTATG
GCTACTACAACAACCAGCGGACCATTGGATGGCTGAGGTACAGGCTGCCCATGGCTTACTTTATGGTGGG
GGTCAGCGTGTTTGGCTACAGCTTGATGATCGTCATTAGGTCGATGGCCAGCAATACCCAGGGTAGCACC
AGTGAGGGGGACAGTGACAGCTTCACATTCAGCTTCAAGATGTTCACCAGCTGGGACTACCTCATCGGGA
ATTCAGAGACAGCAGACAACAAATATGTCTCCATCACTACCAGCTTCAAGGAGTCTATAGTGGACGAACA
AGAGAGTAACAAAGAAGGGAATATCCACCTGACAAGATTCCTCCGCGTCCTGGCCAACTTTCTCATTCTC
TGCTGTCTGTGTGGAAGCGGGTACCTCATTTACTTTGTGGTGAAACGGTCCCAGGAGTTCTCCAAAATGC
AAAATGTCAGCTGGTATGAAAGGAATGAGGTGGAGATCGTGATGTCTTTGCTAGGGATGTTTTGTCCCCC
TCTGTTTGAAACCATCGCTGCCTTGGAGAATTATCACCCACGAACTGGGCTGAAGTGGCAGCTGGGCCGC
ATCTTTGCCCTCTTCCTGGGAAACCTCTACACGTTTCTCCTGGCCCTCATGGACGATGTCCACCTTAAGC
TTTCTAATGAGGAAAAAATCAAGAACATCACTCACTGGACCCTGTTTAACTATTACAATTCCTCAGGTGG
GAATGAGAGTGTGCCCCGGCCACCACCACACCCTGCAGATGTGCCCAGAGGTTCTTGCTGGGAGACAGCT
GTGGGCATTGAGTTTATGAGGCTCACCGTGTCTGACATGCTGGTAACATACCTCACCATCTTGGTCGGAG
ATTTCCTCCGAGCTTGTTTTGTCCGGTTCATGAATCACTGCTGGTGTTGGGACCTCGAGGCTGGTTTTCC
CTCATATGCCGAGTTTGATATTAGTGGAAATGTGTTGGGTTTGATCTTCAACCAAGGAATGATCTGGATG
GGCTCCTTCTATGCTCCAGGACTGGTGGGCATCAATGTCCTGCGCCTGTTGACCTCCATGTACTTCCAGT
GCTGGGCAGTGATGAGCAGCAACGTTCCCCACGAACGTGTGTTTAAAGCCTCCAGATCCAACAACTTCTA
CATGGGCCTGCTGCTGTTGGTGCTCTTCCTCAGCCTCCTGCCTGTGGCCTACACCGTCATGTCTCTCCCA
CCCTCGTTTGACTGTGGCCCCTTCAGTGGGAAAAACAGAATGTACGATGTCCTCCATGAGACCATCGAGA
ACGATTTCCCTAAGTTCCTGGGCAAGATCTTTGCGTTCCTTGCCAACCCAGGCCTGATCATTCCAGCCAT
CCTGCTAATGTTTCTGGCCATTTACTATCTGAACTCAGTTTCAAAAAGTCTTTCTAGAGCTAATGCCCAG
CTGCGAAAGAAGATCCAAGCGCTCCGTGAAGTTGAGAAGAACCATAAATCCATCAAGGGAAAAGCCATAG
TCACATATTCAGAGGACACAATCAAGAACAGCTCCAAAAATGCCACCCAGATACATCTTACTAAAGAAGA
GCCCACATCTCACTCTTCCAGCCAAATCCAGACCCTGGACAAGAAAGCGCAGGGCCCCCACACCTCCAGT
ACTGAGGGTGGGGCCTCGCCATCTACCTCCTGGCACCATGTTGGGTCTCAACCACCGAGAGGCAGACGAG
ATTCTGGCCAACCCCAGTCTCAGACTTACACAGGCAGGTCACCTTCTGGAAAGAGAACCCAGAGGCCTCA
CAACTGA

Translation (888 aa):
MSPQLKSLDEEGDKSARRPTRKQTSRAACPQDGHRAQSSRKDPAKGSPRPGSSRKKQMEHGSYHKGLQGQ
KPRKVERSLQGRKKDRRTSLKEQRASPKKEREALRKEAGKQLRKPRSTSLGSSVSTGDSLSEEELAQILE
QVEEKKKLITTVRNKPWPMAKKLRELREAQAFVEKYEGALGKGKGKHLYAYRMMMAKKWVKFKRDFDNFK
TQCIPWEMKIKDIESHFGSSVASYFIFLRWMYGVNLVLFGLIFGLVIIPEVLMGMPYGSIPRKTVPRAEE
ERAMDFSVLWDFEGYIKYSALFYGYYNNQRTIGWLRYRLPMAYFMVGVSVFGYSLMIVIRSMASNTQGST
SEGDSDSFTFSFKMFTSWDYLIGNSETADNKYVSITTSFKESIVDEQESNKEGNIHLTRFLRVLANFLIL
CCLCGSGYLIYFVVKRSQEFSKMQNVSWYERNEVEIVMSLLGMFCPPLFETIAALENYHPRTGLKWQLGR
IFALFLGNLYTFLLALMDDVHLKLSNEEKIKNITHWTLFNYYNSSGGNESVPRPPPHPADVPRGSCWETA
VGIEFMRLTVSDMLVTYLTILVGDFLRACFVRFMNHCWCWDLEAGFPSYAEFDISGNVLGLIFNQGMIWM
GSFYAPGLVGINVLRLLTSMYFQCWAVMSSNVPHERVFKASRSNNFYMGLLLLVLFLSLLPVAYTVMSLP
PSFDCGPFSGKNRMYDVLHETIENDFPKFLGKIFAFLANPGLIIPAILLMFLAIYYLNSVSKSLSRANAQ
LRKKIQALREVEKNHKSIKGKAIVTYSEDTIKNSSKNATQIHLTKEEPTSHSSSQIQTLDKKAQGPHTSS
TEGGASPSTSWHHVGSQPPRGRRDSGQPQSQTYTGRSPSGKRTQRPHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH