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Report for CCDS16603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16603.1 Public Mus musculus 2 Exd1 23 108 98 CCDS HistoryNCBI Gene:241624Re-query CCDS DB by CCDS ID:16603.1Re-query CCDS DB by GeneID:241624See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060009.8 ENSMUSP00000054980.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060009.8Link to Ensembl Protein Viewer:ENSMUSP00000054980.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060009Re-query CCDS DB by Protein ID:ENSMUSP00000054980
Original member Current member EBI ENSMUST00000171024.7 ENSMUSP00000126713.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171024.7Link to Ensembl Protein Viewer:ENSMUSP00000126713.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171024Re-query CCDS DB by Protein ID:ENSMUSP00000126713
Original member NCBI NM_172857.2 NP_766445.1 Updated not alive Link to Nucleotide Sequence:NM_172857.2Link to Protein Sequence:NP_766445.1Re-query CCDS DB by Nucleotide ID:NM_172857Re-query CCDS DB by Protein ID:NP_766445
Current member NCBI NM_172857.3 NP_766445.1 Accepted alive Link to Nucleotide Sequence:NM_172857.3Link to Protein Sequence:NP_766445.1Re-query CCDS DB by Nucleotide ID:NM_172857Re-query CCDS DB by Protein ID:NP_766445Link to BLAST:NP_766445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766445.1 570 Q8CDF7 570 100% 0 0

Chromosomal Locations for CCDS 16603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119520066 119520725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119523523 119523714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119524572 119524715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119528684 119528764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119528846 119528950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119530089 119530175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119533442 119533500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119538748 119538875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119539123 119539177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119540024 119540092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119541359 119541491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGATCCCAGCAGTGACTACCATTTCCTCAACCAGATTTTGTGGAGAAGGGTGAAGCTCACACTGGTGT
CTGGCATCTTTGAGGGCGTGCTCCAGCACGTGGATCCTAACAAGATTGTTGTCCTGAAAAACGTGAGGAA
TGCAGAGTCGGGCCGCAGCGTCCCAGGGGTGAAAGTGTTCTTCGGGCACGAGATCTTGAATGTGGAACTA
ATGGATGAAGCAGAAGGTGCATCGGGGGAGAAGGCATCCGCTGTTAGCATAAATACAGAACGAGCTGGAA
TGGAGAAAGTGAAAAATGAAGACGTCAATGTCTGTGAGCCGGCTTCACCTGCACCAGAGGTGCCAACCAG
CTCTCTCCTCAGTGACCTCAAGTACTGCCCGTCAGAGGAAGAGGAGGTGACATACACAGTCATTGATCAG
TTCCAGCAGAAGTTTGGTGCTGCAATGCTCCACATCAAGAAGCAGAGTGTCCTGAGTGTTGCTGCCGAAG
GCGCCAATGTGTGTCGCCATGGGAAACTCTGTTGGCTTCAGGTGGCCACAAACAGCCGAGTTTACTTGTT
TGATATTTTCCTTCTGGGAAGTCGTGCTTTCAATAATGGACTTCAGATGATCTTAGAAGACAAGAGAATC
TTAAAGGTTATCCACGATTGTCGCTGGCTCTCTGACTGCCTGTCTCATCAGTATGGAATCATGCTGAACA
ATGTCTTTGATACACAGGTAGCCGACGTCCTTCAATTTTCTATGGAAACGGGTGGCTTTCTTCCAAACTG
TATCAGTACTTTGCAGGAGAGTTTAATCAGACACCTTAAAGTTGCTCCCAGATACCTTTTCTTTTTAGAA
GAGAGACAGAAACGTATTCAGGAAAATCCAGAAATATGGTTGACAAGACCTCTTCCACCCTCTTTATTGA
AAATCTTGGCCCTGGAAACAACCTACCTGCTTCCACTTCGATTGGTGCTCCTGGATGAGGTGATGTCAGA
CTTAACCACACTGGTGGATGGGTACCTGAACACCTACCGGGAGGGCTCTGCAGACCGGCTTGCAGGCACA
GAGCCTGCGTGTATGGAGCTGCCAGCAGAGCTTCTTCAACTCCAGGACTTCCAGAAACAGCGCAGAGAGC
GAGCTGTGAAGGAGTACAGAGTGAACGCACGGGGCCTCCTCATAAGGACTCCACTGCACCCAAAGGAGCC
GACAGCTTGCACAGCAGGGAAAGAGGAGCGAGTCCAGGGTTTCTTATTTTATAAGACGGATGGTGGAGAC
CAAGTTCCACGCTTTTTATGTCCCAAATCTCATGAGGATGAGAAGTTTTTGGATAAAGAATCTAAACAAA
CCACAGCAAAGTCTCAGATTGTGCCTCCCAGGAAGGAAGGCGAAGCCCATAAGGACTCTAAGAACAAACC
GGGGTGTTGGGAGTCAGCGGGGCCAGAAGACCCGAGAGCCCAGAAAGCCCACGCCCTGCCTCCCACGTGG
GCATCTCAGTCCCAGTTTTCTTTGAAAGAGGAGATAGAGCAGTTGACAGTGGTGGGAAATAAGGGAGCTT
TAACAAGCCCAAAAGAAGGCGCTTTGGTGTCGCCTTCTCTCCTTCAGGAAACCTGGGAGGCACCAACTGA
CACCTTCCATCTTCCTGAAAAAGCTGAGGTCTCTACACTTCCTCCCTGTCCAGCCCTGGAGAAGACAGAC
TCATGGATAAGTCCATCTTTAAATCTGTTTTAG

Translation (570 aa):
MDPSSDYHFLNQILWRRVKLTLVSGIFEGVLQHVDPNKIVVLKNVRNAESGRSVPGVKVFFGHEILNVEL
MDEAEGASGEKASAVSINTERAGMEKVKNEDVNVCEPASPAPEVPTSSLLSDLKYCPSEEEEVTYTVIDQ
FQQKFGAAMLHIKKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRI
LKVIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRYLFFLE
ERQKRIQENPEIWLTRPLPPSLLKILALETTYLLPLRLVLLDEVMSDLTTLVDGYLNTYREGSADRLAGT
EPACMELPAELLQLQDFQKQRRERAVKEYRVNARGLLIRTPLHPKEPTACTAGKEERVQGFLFYKTDGGD
QVPRFLCPKSHEDEKFLDKESKQTTAKSQIVPPRKEGEAHKDSKNKPGCWESAGPEDPRAQKAHALPPTW
ASQSQFSLKEEIEQLTVVGNKGALTSPKEGALVSPSLLQETWEAPTDTFHLPEKAEVSTLPPCPALEKTD
SWISPSLNLF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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