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Report for CCDS16561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16561.1 Public Mus musculus 2 Scg5 23 108 98 CCDS HistoryNCBI Gene:20394Re-query CCDS DB by CCDS ID:16561.1Re-query CCDS DB by GeneID:20394See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024005.7 ENSMUSP00000024005.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024005.7Link to Ensembl Protein Viewer:ENSMUSP00000024005.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024005Re-query CCDS DB by Protein ID:ENSMUSP00000024005
Original member NCBI NM_009162.3 NP_033188.3 Updated not alive Link to Nucleotide Sequence:NM_009162.3Link to Protein Sequence:NP_033188.3Re-query CCDS DB by Nucleotide ID:NM_009162Re-query CCDS DB by Protein ID:NP_033188
Current member NCBI NM_009162.4 NP_033188.3 Accepted alive Link to Nucleotide Sequence:NM_009162.4Link to Protein Sequence:NP_033188.3Re-query CCDS DB by Nucleotide ID:NM_009162Re-query CCDS DB by Protein ID:NP_033188Link to BLAST:NP_033188.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033188.3 212 P12961 212 100% 0 0

Chromosomal Locations for CCDS 16561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113776801 113776896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113780634 113780687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113788736 113788848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113791880 113792029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113827339 113827564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCCTCAAGGCTGGTCTCTGCTATGCTATCTGGCCTTTTGTTTTGGTTGATGTTTGAGTGGAATCCAG
CATTCGCTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGT
TATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGG
CCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGGGTCCTTTTGGCAACATCCCCAACA
TAGTGGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATCAAGGCTACCCAGACCCTCC
AAATCCCTGTCCTCTTGGGAAAACTGCTGATGATGGATGTCTAGAAAACGCCCCCGACACTGCAGAGTTC
AGCCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCCAGAACATGACTACCCAGGTTTGGGCAAGTGGA
ACAAGAAACTCCTTTATGAGAAAATGAAGGGAGGACAGAGGCGGAAGCGGAGGAGTGTCAATCCCTATCT
ACAAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGAGAAGGAA
GCAGAATAA

Translation (212 aa):
MASRLVSAMLSGLLFWLMFEWNPAFAYSPRTPDRVSETDIQRLLHGVMEQLGIARPRVEYPAHQAMNLVG
PQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPCPLGKTADDGCLENAPDTAEF
SREFQLDQHLFDPEHDYPGLGKWNKKLLYEKMKGGQRRKRRSVNPYLQGKRLDNVVAKKSVPHFSEEEKE
AE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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