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Report for CCDS16193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16193.1 Public Mus musculus 2 Serping1 23 108 98 CCDS HistoryNCBI Gene:12258Re-query CCDS DB by CCDS ID:16193.1Re-query CCDS DB by GeneID:12258See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023994.9 ENSMUSP00000023994.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023994.9Link to Ensembl Protein Viewer:ENSMUSP00000023994.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023994Re-query CCDS DB by Protein ID:ENSMUSP00000023994
Original member NCBI NM_009776.3 NP_033906.2 Updated not alive Link to Nucleotide Sequence:NM_009776.3Link to Protein Sequence:NP_033906.2Re-query CCDS DB by Nucleotide ID:NM_009776Re-query CCDS DB by Protein ID:NP_033906
Current member NCBI NM_009776.4 NP_033906.2 Accepted alive Link to Nucleotide Sequence:NM_009776.4Link to Protein Sequence:NP_033906.2Re-query CCDS DB by Nucleotide ID:NM_009776Re-query CCDS DB by Protein ID:NP_033906Link to BLAST:NP_033906.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033906.2 504 P97290 504 100% 0 0

Chromosomal Locations for CCDS 16193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84765574 84765827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84767275 84767494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84769774 84769910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84770093 84770296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84771425 84771559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84773131 84773644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84774740 84774790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGCCTCCAGGCTGACCCCACTGACCCTCCTGCTGCTGCTGCTGGCTGGGGATAGAGCCTTCTCAGATC
CCGAAGCTACCAGCCACAGCACCCAGGATCCACTGGAGGCTCAAGCGAAAAGCAGAGAGAGCTTCCCTGA
AAGAGATGACTCCTGGAGTCCCCCAGAGCCTACAGTACTGCCCTCTACCTGGCCAACAACCAGTGTAGCC
ATCACAATAACAAATGACACCATGGGTAAAGTAGCCAACGAGTCCTTCAGCCAGCACAGCCAGCCAGCTG
CTCAGCTACCCACAGATTCTCCAGGACAGCCCCCTCTGAATTCTTCCAGCCAGCCCTCCACTGCCTCAGA
TCTTCCCACCCAGGCTACTACTGAACCCTTCTGCCCGGAGCCGCTTGCTCAGTGCTCTGATTCAGACAGA
GACTCCTCAGAGGCAAAGCTCTCAGAGGCTTTGACAGATTTCTCTGTGAAGCTCTACCACGCCTTCTCAG
CTACCAAGATGGCTAAGACCAACATGGCCTTTTCCCCATTCAGCATTGCCAGCCTCCTCACACAGGTTCT
TCTTGGGGCTGGAGACAGCACCAAGAGCAACTTGGAGAGCATCCTTTCCTACCCCAAGGATTTTGCCTGT
GTCCACCAAGCACTAAAGGGCTTTTCATCCAAAGGTGTCACTTCTGTGTCTCAGATTTTCCACAGCCCAG
ATCTGGCCATAAGGGACACCTATGTGAATGCATCTCAGAGCCTGTATGGAAGCAGCCCCAGAGTCCTGGG
CCCAGACAGTGCTGCTAACTTAGAACTCATCAACACCTGGGTGGCTGAGAACACCAACCATAAGATCCGC
AAGCTGCTGGACAGCCTGCCTTCTGACACCTGCCTCGTCCTTCTCAATGCTGTCTACTTGAGTGCCAAGT
GGAAGATAACATTTGAACCAAAAAAGATGATGGCGCCTTTCTTCTACAAAAACTCTATGATTAAAGTGCC
CATGATGAGTAGCGTAAAGTACCCTGTGGCCCAATTCGATGACCATACTTTGAAGGCCAAGGTGGGACAG
CTGCAGCTCTCTCACAACCTGAGCTTTGTGATCGTGGTACCCGTGTTCCCAAAGCACCAACTTAAAGATG
TAGAAAAGGCTCTCAACCCCACTGTCTTCAAGGCCATCATGAAGAAGCTGGAGCTGTCCAAATTCCTGCC
CACTTACCTGACGATGCCTCATATAAAAGTAAAGAGCAGCCAAGACATGCTGTCAGTCATGGAGAAACTG
GAATTCTTTGACTTCACTTACGATCTCAACCTGTGCGGGCTGACCGAGGACCCAGATCTTCAGGTGTCTG
CCATGAAACACGAGACAGTGCTGGAACTGACAGAGTCAGGGGTGGAAGCAGCTGCAGCCTCTGCCATCTC
CTTTGGCCGAAGCTTACCCATCTTTGAGGTGCAGCGACCTTTCCTCTTCCTGCTCTGGGACCAGCAACAC
AGGTTCCCAGTCTTCATGGGTCGTGTATATGACCCCAGGGGTTGA

Translation (504 aa):
MASRLTPLTLLLLLLAGDRAFSDPEATSHSTQDPLEAQAKSRESFPERDDSWSPPEPTVLPSTWPTTSVA
ITITNDTMGKVANESFSQHSQPAAQLPTDSPGQPPLNSSSQPSTASDLPTQATTEPFCPEPLAQCSDSDR
DSSEAKLSEALTDFSVKLYHAFSATKMAKTNMAFSPFSIASLLTQVLLGAGDSTKSNLESILSYPKDFAC
VHQALKGFSSKGVTSVSQIFHSPDLAIRDTYVNASQSLYGSSPRVLGPDSAANLELINTWVAENTNHKIR
KLLDSLPSDTCLVLLNAVYLSAKWKITFEPKKMMAPFFYKNSMIKVPMMSSVKYPVAQFDDHTLKAKVGQ
LQLSHNLSFVIVVPVFPKHQLKDVEKALNPTVFKAIMKKLELSKFLPTYLTMPHIKVKSSQDMLSVMEKL
EFFDFTYDLNLCGLTEDPDLQVSAMKHETVLELTESGVEAAAASAISFGRSLPIFEVQRPFLFLLWDQQH
RFPVFMGRVYDPRG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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