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Report for CCDS16173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16173.1 Public Mus musculus 2 Pde1a 23 108 98 CCDS HistoryNCBI Gene:18573Re-query CCDS DB by CCDS ID:16173.1Re-query CCDS DB by GeneID:18573See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102652.9 ENSMUSP00000099712.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102652.9Link to Ensembl Protein Viewer:ENSMUSP00000099712.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102652Re-query CCDS DB by Protein ID:ENSMUSP00000099712
Original member NCBI NM_001009978.1 NP_001009978.1 Updated not alive Link to Nucleotide Sequence:NM_001009978.1Link to Protein Sequence:NP_001009978.1Re-query CCDS DB by Nucleotide ID:NM_001009978Re-query CCDS DB by Protein ID:NP_001009978
Current member NCBI NM_001009978.2 NP_001009978.1 Accepted alive Link to Nucleotide Sequence:NM_001009978.2Link to Protein Sequence:NP_001009978.1Re-query CCDS DB by Nucleotide ID:NM_001009978Re-query CCDS DB by Protein ID:NP_001009978Link to BLAST:NP_001009978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009978.1 456 Q61481-5 456 100% 0 0

Chromosomal Locations for CCDS 16173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79859222 79859232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79865038 79865225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79865622 79865742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79868230 79868311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79875003 79875123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79875229 79875330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79878123 79878248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79887841 79887941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79897065 79897205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79898066 79898182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79901812 79901878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79905990 79906172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79908345 79908355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGATCTTTAGAAGACTGCTGGACACAGAGGATGAACTCAGCGACATCCAGACTGACTCCGTCCCATCGG
AAGTCCGGGATTGGTTGGCTTCAACTTTCACACGCAAAATGGGGATGATGAAAAAGAAGCCTGAAGAAAA
ACCAAAGTTTCGCAGCATTGTCCATGCTGTCCAGGCTGGGATTTTTGTGGAAAGGATGTACAGGAAGAAC
TATCACATGGTTGGTTTGACATATCCTGCAGCTGTCATAGTGACACTCAAGGAAGTTGATAAATGGTCTT
TTGATGTATTTGCCTTAAATGAAGCAAGCGGGGAGCATAGCCTGAAGTTTATGATTTATGAACTCTTTAC
CAGATATGATCTTATCAACCGCTTCAAGATTCCTGTTTCTTGCCTAATTGCCTTTGCAGAAGCCTTAGAA
GTTGGTTACAGCAAGCACAAAAATCCATATCATAATTTGGTCCATGCAGCTGACGTCACTCAAACTGTGC
ATTATATAATGCTTCATACAGGTATCATGCACTGGCTCACTGAACTGGAAATTTTAGCCATGGTCTTTGC
AGCTGCCATTCATGATTATGAGCACACAGGAACAACAAACAACTTCCATATTCAGACGAGGTCGGACGTT
GCTATTCTGTACAACGACCGCTCAGTGCTTGAGAATCACCACGTCAGCGCAGCCTACAGACTTATGCAAG
AGGAGGAAATGAATATTTTGGTAAATTTGTCTAAAGATGACTGGAGGGATCTTCGGAACTTAGTGATTGA
AATGGTCTTAGCGACAGACATGTCAGGGCATTTTCAGCAAATTAAAAACATAAGAAACAGCTTGCAGCAG
CCGGAAGGGATTGACAGAGCCAAAACTATGTCCCTGATACTCCATGCAGCTGACATCAGCCACCCAGCCA
AAACTTGGAAGTTGCACTACAGATGGACCATGGCCCTAATGGAGGAGTTTTTCCTGCAGGGAGACAAAGA
AGCTGAATTAGGGCTTCCATTTTCTCCACTTTGTGATCGGAAGTCAACAATGGTTGCCCAGTCGCAAATA
GGTTTCATTGATTTCATAGTGGAGCCAACGTTTTCTCTCCTGACGGACTCAACAGAGAAAATTGTCATTC
CTCTTATAGAGGAAGCTTCAAAGTCACAGTCTTCAAACTACGGGGCAAGCAGCTCGTCCACCATGATTGG
GTTCCATGTTGCTGACTCTCTGAGGCGGTCAAATACAAAAGGCTCCGTGTGTGATGGGAGCTATGCCCCA
GACTACTCGCTCTCAGCTGTGGATCTGAAGAGTTTCAAAAACAACCTGGTGGACATCATTCAGCAGAACA
AAGAGAGGTGGAAAGAGTTGGCTGCCCAAGGTTGTTGCTAA

Translation (456 aa):
MIFRRLLDTEDELSDIQTDSVPSEVRDWLASTFTRKMGMMKKKPEEKPKFRSIVHAVQAGIFVERMYRKN
YHMVGLTYPAAVIVTLKEVDKWSFDVFALNEASGEHSLKFMIYELFTRYDLINRFKIPVSCLIAFAEALE
VGYSKHKNPYHNLVHAADVTQTVHYIMLHTGIMHWLTELEILAMVFAAAIHDYEHTGTTNNFHIQTRSDV
AILYNDRSVLENHHVSAAYRLMQEEEMNILVNLSKDDWRDLRNLVIEMVLATDMSGHFQQIKNIRNSLQQ
PEGIDRAKTMSLILHAADISHPAKTWKLHYRWTMALMEEFFLQGDKEAELGLPFSPLCDRKSTMVAQSQI
GFIDFIVEPTFSLLTDSTEKIVIPLIEEASKSQSSNYGASSSSTMIGFHVADSLRRSNTKGSVCDGSYAP
DYSLSAVDLKSFKNNLVDIIQQNKERWKELAAQGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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