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Report for CCDS16131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16131.1 Public Mus musculus 2 Wipf1 23 108 98 CCDS HistoryNCBI Gene:215280Re-query CCDS DB by CCDS ID:16131.1Re-query CCDS DB by GeneID:215280See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094681.10 ENSMUSP00000092268.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094681.10Link to Ensembl Protein Viewer:ENSMUSP00000092268.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094681Re-query CCDS DB by Protein ID:ENSMUSP00000092268
Original member Current member EBI ENSMUST00000102679.7 ENSMUSP00000099740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102679.7Link to Ensembl Protein Viewer:ENSMUSP00000099740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102679Re-query CCDS DB by Protein ID:ENSMUSP00000099740
Original member Current member EBI ENSMUST00000102680.7 ENSMUSP00000099741.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102680.7Link to Ensembl Protein Viewer:ENSMUSP00000099741.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102680Re-query CCDS DB by Protein ID:ENSMUSP00000099741
Original member Current member NCBI NM_001289722.1 NP_001276651.1 Accepted alive Link to Nucleotide Sequence:NM_001289722.1Link to Protein Sequence:NP_001276651.1Re-query CCDS DB by Nucleotide ID:NM_001289722Re-query CCDS DB by Protein ID:NP_001276651Link to BLAST:NP_001276651.1
Original member Current member NCBI NM_001289723.1 NP_001276652.1 Accepted alive Link to Nucleotide Sequence:NM_001289723.1Link to Protein Sequence:NP_001276652.1Re-query CCDS DB by Nucleotide ID:NM_001289723Re-query CCDS DB by Protein ID:NP_001276652Link to BLAST:NP_001276652.1
Original member Current member NCBI NM_153138.4 NP_694778.1 Accepted alive Link to Nucleotide Sequence:NM_153138.4Link to Protein Sequence:NP_694778.1Re-query CCDS DB by Nucleotide ID:NM_153138Re-query CCDS DB by Protein ID:NP_694778Link to BLAST:NP_694778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276651.1 493 Q8K1I7 493 100% 0 0
NP_001276652.1 493 Q8K1I7 493 100% 0 0
NP_694778.1 493 Q8K1I7 493 100% 0 0

Chromosomal Locations for CCDS 16131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73432410 73432465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73434030 73434143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73434946 73435158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73436954 73437691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73439977 73440156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73444445 73444574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73447849 73447899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCCTGTCCCTCCCCCACCAGCACCCCCACCGCCACCAACATTTGCACTCGCTAACACTGAGAAGCCCA
CCTTGAACAAGACAGAGCAGGCTGGGAGGAATGCTCTTCTCTCTGACATCAGCAAAGGGAAGAAGCTAAA
GAAGACGGTCACCAATGACAGAAGTGCCCCAATATTGGACAAACCAAAGGGAGCCGGCGCCAGTGCTGGT
GGCTATGGTGGAGGCGGCGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCAGCGGTGGAAATTTTG
GAGGGGGTGGTCCTCCAGGACTGGGAGGACTATTCCAGGCTGGAATGCCGAAGCTGAGGTCCACCGCCAA
CAGGGATAATGATTCTGGAGGAAGCCGACCACCGATTTTGCCACCGGGAGGAAGAGCCACATCTGCCAAG
CCCTTTTCACCCCCGAGTGGCCCGGGGAGGTTTCCCGCACCCTCCCCAGGCCACAGGAGTGGGCCCCCAG
AGCCACCCAGGAACAGAATGCCTCCCCCGAGGCCTGACGTGGGCTCAAAACCAGATAGCCTTCCCCCTCC
GGTACCAAATACGCCAAGACCTGTTCCGTCGAGTCTGCACAACCGGGGATCCCCAGCAGGGCTGGGAGCC
CCCAGGCCCCCCTTTCCCGGGAACCGAGGTGCTGCTTTTGGAGCAGGCTCTGCGCGCCAGAACCCCTCCG
GCTCCTCCTCTCCGTTTCCTAGGCCCCCTTTGCCCCCCACCCCAAGCCGAGCCTTGGATGACAAGCCCCC
TCCACCACCTCCTCCCGTGGGCAACAGGCCCTCCATGCACAGAGAAGCGGTGCCCCCTCCCCCCTCACAG
ACCAGCAAACCTCCAGTGCCTTCCACCCCGCGGCCTGGGTTGGGTTCGCAGGCACCACCTCCTCCTCCAC
CGCCCAGCCGGCCAGGGCCCCCTCCTCTGCCTCCAGCTTCCAACGACGAGATCCCCAGGCTGCCACAGCG
GAACCTGTCCCTCACGTCCTCTGCACCTCCATTGCCTTCACCTGGACGCTCAGGGCCTCTCCCTCCCCCA
CCCAGCGAGAGGCCCCCTCCTCCTGTAAGGGATCCACCAGGCAGATCAGGCCCCCTCCCACCACCACCTC
CAATAAACAGAAATGGAAGCACAGCTCGGGCCCTGCCTGCCACCCCTCAGTTGCCATCCAGGAGTGGAAT
GGACAGTCCCAGAAGTGGGCCTAGGCCTCCTCTTCCTCCTGACAGGCCTGGTGCTGGGGCGCCGCCCCCA
CCCCCACCCTCCACATCAGTTCGAAATGGCTTCCAAGACTCATCGTGTGAAGATGAGTGGGAAAGCAGAT
TCTACTTCCATCCGATTTCTGACTTGCCGCCTCCAGAGCCATACGTACCGACAACCAAGACGTATCCCAG
CAAACTGGCCAGAAACGAAAGCCGAAGTGGATCCAACAGAAGAGAAAGGGGCGCCCCACCCCTTCCTCCC
ATCCCGAGGTGA

Translation (493 aa):
MPVPPPPAPPPPPTFALANTEKPTLNKTEQAGRNALLSDISKGKKLKKTVTNDRSAPILDKPKGAGASAG
GYGGGGGGGGGGGGGGGGSGGNFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPILPPGGRATSAK
PFSPPSGPGRFPAPSPGHRSGPPEPPRNRMPPPRPDVGSKPDSLPPPVPNTPRPVPSSLHNRGSPAGLGA
PRPPFPGNRGAAFGAGSARQNPSGSSSPFPRPPLPPTPSRALDDKPPPPPPPVGNRPSMHREAVPPPPSQ
TSKPPVPSTPRPGLGSQAPPPPPPPSRPGPPPLPPASNDEIPRLPQRNLSLTSSAPPLPSPGRSGPLPPP
PSERPPPPVRDPPGRSGPLPPPPPINRNGSTARALPATPQLPSRSGMDSPRSGPRPPLPPDRPGAGAPPP
PPPSTSVRNGFQDSSCEDEWESRFYFHPISDLPPPEPYVPTTKTYPSKLARNESRSGSNRRERGAPPLPP
IPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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