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Report for CCDS16112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16112.1 Public Mus musculus 2 Dync1i2 23 108 98 CCDS HistoryNCBI Gene:13427Re-query CCDS DB by CCDS ID:16112.1Re-query CCDS DB by GeneID:13427See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081710.11 ENSMUSP00000080410.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081710.11Link to Ensembl Protein Viewer:ENSMUSP00000080410.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081710Re-query CCDS DB by Protein ID:ENSMUSP00000080410
Original member Current member EBI ENSMUST00000112138.7 ENSMUSP00000107766.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112138.7Link to Ensembl Protein Viewer:ENSMUSP00000107766.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112138Re-query CCDS DB by Protein ID:ENSMUSP00000107766
Original member Current member NCBI NM_001198876.1 NP_001185805.1 Accepted alive Link to Nucleotide Sequence:NM_001198876.1Link to Protein Sequence:NP_001185805.1Re-query CCDS DB by Nucleotide ID:NM_001198876Re-query CCDS DB by Protein ID:NP_001185805Link to BLAST:NP_001185805.1
Original member Current member NCBI NM_010064.4 NP_034194.1 Accepted alive Link to Nucleotide Sequence:NM_010064.4Link to Protein Sequence:NP_034194.1Re-query CCDS DB by Nucleotide ID:NM_010064Re-query CCDS DB by Protein ID:NP_034194Link to BLAST:NP_034194.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185805.1 612 O88487 612 100% 0 0
NP_034194.1 612 O88487 612 100% 0 0

Chromosomal Locations for CCDS 16112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 71214448 71214555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71219301 71219418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71228600 71228690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71235915 71236030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71246689 71246784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71247013 71247175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71247289 71247388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71247821 71247946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71248787 71248933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71249309 71249422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71249719 71249852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71250842 71250986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71258084 71258224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71260822 71260947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71262648 71262761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGTCGGACAAAAGTGATTTAAAAGCTGAGTTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAG
AAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAGGAAACTGATCAGAAGAAGGAAGCTGCTGTTTCTGT
ACAAGAAGAGTCTGATCTTGAAAAAAAAAGAAGAGAAGCTGAGGCATTGCTTCAAAGCATGGGACTAACT
ACGGACTCCCCTATTGTCCCTCCTCCTATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTG
GAAGCCAGGATTCTGGAGATGGCGCCGTGGGATCTAGACGAGGACCTATTAAACTTGGAATGGCCAAAAT
TACTCAAGTTGACTTTCCCCCTCGAGAAATCGTCACATACACAAAGGAAACTCAGACCCCGGTTACAGCT
CAACCCAAAGAAGATGAGGAGGAGGAAGATGATGTAGCAACTCCTAAACCTCCTGTTGAACCTGAAGAAG
AGAAAACTTTGAAAAAAGACGAAGAGAATGATAGCAAAGCTCCACCTCATGAACTAACTGAAGAAGAAAA
GCAACAGATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCATTCTACGAGAATTGTAGAAAGAGCC
CTTTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGAGAGACTTGGAAGACAAAGAAGGGGAGATTC
AAGCAGGTGCTAAGCTGTCATTAAATCGACAGTTCTTTGATGAGCGTTGGTCAAAGCATCGAGTTGTTAG
TTGTTTGGATTGGTCATCCCAGTATCCAGAATTACTTGTGGCTTCCTATAATAACAATGAAGAGGCTCCT
CATGAGCCTGATGGTGTGGCCCTCGTGTGGAATATGAAGTACAAAAAAACTACCCCAGAGTATGTGTTCC
ACTGCCAGTCAGCTGTAATGTCTGCTACATTTGCAAAATTTCATCCGAATCTTGTTGTTGGAGGTACATA
TTCAGGCCAGATTGTGCTTTGGGATAACCGCAGCAATAAAAGAACTCCTGTCCAGAGAACGCCGCTGTCA
GCTGCTGCACACACACACCCTGTCTACTGTGTAAATGTTGTTGGAACACAAAATGCTCACAATCTGATTA
GCATCTCTACTGATGGAAAAATTTGTTCCTGGAGTTTGGACATGCTTTCCCATCCACAGGATAGCATGGA
GTTGGTTCATAAACAGTCAAAGGCAGTAGCTGTAACATCTATGTCTTTCCCTGTTGGAGACGTCAACAAC
TTTGTTGTGGGCAGTGAAGAAGGTTCTGTGTATACAGCATGCCGCCATGGCAGCAAAGCTGGAATCAGTG
AGATGTTTGAGGGACACCAGGGACCCATCACTGGAATCCACTGTCACGCGGCTGTTGGAGCAGTAGACTT
CTCACATCTGTTTGTCACTTCGTCTTTTGACTGGACAGTTAAACTTTGGACAACTAAGAATAACAAGCCT
TTGTACTCATTTGAAGATAATTCAGACTATGTCTATGATGTTATGTGGTCACCCACCCACCCAGCCCTGT
TTGCCTGTGTGGACGGCATGGGGAGACTGGATCTATGGAATCTCAACAATGACACAGAGGTACCAACTGC
CAGCATTTCTGTGGAGGGCAACCCTGCTCTTAACCGTGTGAGATGGACCCACTCAGGAAGAGAAATTGCC
GTGGGTGATTCTGAAGGACAGATTGTCATCTATGATGTGGGAGAGCAGATCGCTGTTCCCCGAAATGATG
AATGGGCAAGATTTGGCCGAACACTCGCAGAAATTAACGCAAACCGAGCTGACGCAGAGGAGGAGGCAGC
TACCCGAATCCCTGCCTAG

Translation (612 aa):
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALLQSMGLT
TDSPIVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTA
QPKEDEEEEDDVATPKPPVEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERA
LSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAP
HEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLS
AAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNN
FVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKP
LYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIA
VGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRADAEEEAATRIPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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