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Report for CCDS16084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16084.1 Public Mus musculus 2 Stk39 23 108 98 CCDS HistoryNCBI Gene:53416Re-query CCDS DB by CCDS ID:16084.1Re-query CCDS DB by GeneID:53416See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102715.3 ENSMUSP00000099776.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102715.3Link to Ensembl Protein Viewer:ENSMUSP00000099776.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102715Re-query CCDS DB by Protein ID:ENSMUSP00000099776
Original member NCBI NM_016866.2 NP_058562.1 Updated not alive Link to Nucleotide Sequence:NM_016866.2Link to Protein Sequence:NP_058562.1Re-query CCDS DB by Nucleotide ID:NM_016866Re-query CCDS DB by Protein ID:NP_058562
Current member NCBI NM_016866.3 NP_058562.1 Accepted alive Link to Nucleotide Sequence:NM_016866.3Link to Protein Sequence:NP_058562.1Re-query CCDS DB by Nucleotide ID:NM_016866Re-query CCDS DB by Protein ID:NP_058562Link to BLAST:NP_058562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058562.1 556 Q9Z1W9 556 100% 0 0

Chromosomal Locations for CCDS 16084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68211919 68211993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68220904 68220968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68263235 68263303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68267039 68267091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68307041 68307108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68308992 68309054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68314364 68314393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68314481 68314603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68358814 68358879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68358986 68359034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68366074 68366207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68368397 68368498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68368996 68369105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68390914 68390969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68392111 68392252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68398424 68398532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68410029 68410141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68471634 68471877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGCGGAGCCGAGCGGCTCGCCTGTGCACGTCCAGCTTTCCCAGCAGGCGGCCCCGGTGACAGCGGCGG
CGGCGACGGCCCCGGCGGCCGCGACATCAGCACCAGCCCCGGCCCCGGCCCCGGCTCCGGCGGCGTCCGC
AGCCCCGGCCCCGGCTCCAGCTGCTGCTCCAGCCCCGGCCCCGGCAGCTCAGGCGGTCGGCTGGCCCATC
TGCAGGGACGCGTACGAGCTCCAGGAGGTTATCGGCAGCGGAGCAACTGCGGTGGTTCAGGCAGCCCTAT
GCAAACCCAGGCAAGAACGCGTAGCCATAAAGCGGATCAACTTGGAAAAATGCCAGACGAGTATGGATGA
ACTCCTGAAAGAAATTCAAGCCATGAGCCAATGCAGCCATCCCAACGTAGTGACTTATTACACCTCCTTT
GTGGTCAAAGATGAGCTGTGGCTGGTCATGAAATTACTAAGTGGAGGTTCCATGTTGGATATCATCAAAT
ACATCGTTAATCGAGGAGAACATAAAAATGGTGTCCTAGAAGAGGCGATAATTGCAACAATTCTTAAGGA
GGTTTTGGAAGGTTTAGACTATCTGCACAGAAACGGTCAGATCCATAGGGATTTGAAAGCTGGAAATATT
CTTCTGGGTGAGGATGGCTCAGTACAAATAGCAGATTTTGGAGTAAGCGCATTCTTAGCCACAGGGGGTG
ATGTTACACGGAATAAAGTCAGAAAAACATTTGTTGGTACCCCATGTTGGATGGCCCCTGAAGTCATGGA
ACAGGTGAGAGGCTATGACTTCAAGGCTGATATGTGGAGTTTTGGAATAACTGCCATTGAATTAGCAACC
GGAGCAGCGCCTTACCACAAATACCCTCCAATGAAAGTGCTAATGCTGACTTTGCAAAATGACCCGCCCA
CTTTAGAAACTGGTGTAGAGGATAAAGAAATGATGAAAAAATACGGCAAGTCCTTCAGAAAGTTACTGTC
ACTGTGTCTTCAGAAAGATCCTTCCAAAAGGCCCACAGCAGCAGAACTTTTAAAATGCAAGTTCTTCCAG
AAAGCCAAGAACAGAGAGTACCTGATCGAGAAGCTGCTGACAAGAACCCCAGACATAGCCCAAAGAGCCA
AGAAGGTAAGGCGAGTTCCTGGGTCGAGCGGTCACCTTCATAAGACTGAAGACGGCGACTGGGAGTGGAG
CGATGACGAGATGGATGAGAAGAGCGAGGAGGGGAAGGCAGCCGCCTCCCAAGAGAAGTCACGAAGAGTA
AAAGAAGAGAACTCAGAGATCTCGGTGAATGCTGGTGGCATCCCTGAGCAAATACAGTCTCTCTCTGTGC
ACGACTCTCAGGCCCAACCAAACGCTAATGAAGACTACAGAGAAGGTCCTTGTGCAGTCAACCTTGTTTT
AAGATTAAGAAACTCCAGAAAGGAACTTAATGACATACGATTTGAGTTTACTCCAGGAAGAGATACAGCA
GACGGTGTGTCTCAGGAGCTCTTCTCTGCTGGCTTGGTTGACGGCCATGATGTAGTTATAGTGGCTGCTA
ATTTACAGAAGATTGTAGATGACCCCAAAGCTTTAAAAACGTTGACATTTAAGTTGGCTTCTGGCTGCGA
TGGGTCGGAGATTCCTGATGAAGTGAAGCTGATCGGGTTCGCCCAGTTGAGTGTGAGCTGA

Translation (556 aa):
MAEPSGSPVHVQLSQQAAPVTAAAATAPAAATSAPAPAPAPAPAASAAPAPAPAAAPAPAPAAQAVGWPI
CRDAYELQEVIGSGATAVVQAALCKPRQERVAIKRINLEKCQTSMDELLKEIQAMSQCSHPNVVTYYTSF
VVKDELWLVMKLLSGGSMLDIIKYIVNRGEHKNGVLEEAIIATILKEVLEGLDYLHRNGQIHRDLKAGNI
LLGEDGSVQIADFGVSAFLATGGDVTRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADMWSFGITAIELAT
GAAPYHKYPPMKVLMLTLQNDPPTLETGVEDKEMMKKYGKSFRKLLSLCLQKDPSKRPTAAELLKCKFFQ
KAKNREYLIEKLLTRTPDIAQRAKKVRRVPGSSGHLHKTEDGDWEWSDDEMDEKSEEGKAAASQEKSRRV
KEENSEISVNAGGIPEQIQSLSVHDSQAQPNANEDYREGPCAVNLVLRLRNSRKELNDIRFEFTPGRDTA
DGVSQELFSAGLVDGHDVVIVAANLQKIVDDPKALKTLTFKLASGCDGSEIPDEVKLIGFAQLSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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