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Report for CCDS16070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16070.1 Public Mus musculus 2 Fign 23 108 98 CCDS HistoryNCBI Gene:60344Re-query CCDS DB by CCDS ID:16070.1Re-query CCDS DB by GeneID:60344See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000131615.8 ENSMUSP00000122855.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131615.8Link to Ensembl Protein Viewer:ENSMUSP00000122855.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000131615Re-query CCDS DB by Protein ID:ENSMUSP00000122855
Original member Current member NCBI NM_021716.5 NP_068362.1 Accepted alive Link to Nucleotide Sequence:NM_021716.5Link to Protein Sequence:NP_068362.1Re-query CCDS DB by Nucleotide ID:NM_021716Re-query CCDS DB by Protein ID:NP_068362Link to BLAST:NP_068362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068362.1 759 Q9ERZ6-1 759 100% 0 0

Chromosomal Locations for CCDS 16070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 63978645 63980899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64096895 64096919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGATCAGTAGCACCAGTGTTTATGGCTTGAAGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAAC
AGCACTTTGACATCACCTCGACCACTCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTCATTTACA
GCGCACCTACCAGTATGCCTGGGCGAATGATGACATATCTGCTCTGACTGCGTCCAACCTTCTGAAAAAA
TATGCAGAGAAGTATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTACTCAGCAATTATTCAGACA
CACCATCAGGACTCGTGAATGGTCGGAAAAATGATAGCGAACCCTGGCAGCCTTCCTTGAATTCAGAAGC
CGTTTATCCTATGAACTGTGTCCCGGATGTCATCACTGCCAGCAAAGCTGGTGTCAGCTCAGCCCTCCCT
CCAGTAGACGTCTCGGCAAGTATAGGGAGCTCCCCTGGGGTGGCCAGCAACCTGACAGAGCCAAGTTACT
CAAGTAGTACCTGTGGAAGCCACACAGTACCTAGTCTTCATGCGGGGCTCCCATCTCAGGAATATGCTCC
GGGATACAACGGCTCATATTTGCATTCTACCTACAGCAGCCAGGCCACACCTGCACTTCCTTCGCCTCAT
CCGTCCCCGTTGCATAGTTCTGGGCTTTTGCAGCCACCACCCCCTCCTCCTCCCCCACCAGCCCTGGTCC
CAGGCTACAACGGGACTTCCAATCTCTCCAGTTACAGTTATCCCTCTGCTAGCTATCCTCCTCAGACTGC
CGTGGGGTCTGGGTACAGCCCTGGCGGAGCACCCCCTCCTCCTTCAGCATACCTGCCTTCAGGAATTCCT
GCTCCCACCCCTCTGCCCCCCACTACCGTTCCTGGCTACACCTACCAAGGTCATGGTTTGACACCCATTG
CACCCTCTGCTCTGACCAACAATTCAGCAAGTTCTCTCAAAAGGAAAGCTTTCTATATGGCAGGGCAAGG
AGACATGGACTCCAGTTACGGAAATTACAGCTATGGCCAACAGAGATCGACACAGAGTCCTATGTACCGA
ATGCCCGACAACAGCATTTCAAACTCGAATCGGGGGAATGGCTTTGACAGAAATGCTGAAACATCATCCT
TAGCATTTAAGCCAACAAAGCAGCTGATGCCCTCTGAGCAGCAAAGGAAATTCAGCAGCCAGTCCAGTAG
GGCTCTGACCCCTCCTTCCTATAGTACTGCTAAAAATTCATTGGGATCAAGGTCCAGTGAATCCTTTGGG
AAGTATACGTCGCCAGTCATGAGTGAGCACGGAGACGACCATCGGCAGCTCCTCGCTCATCCAATACAAG
GTCCCGGACTCCGTGCAGCTACCTCATCCAACCACTCTGTGGACGAGCAACTGAAGAATACTGACACACA
CCTCATTGACCTGGTCACCAATGAGATCATCACCCAAGGACCTCCTGTGGACTGGAGCGACATAGCTGGT
CTTGACCTGGTGAAGGCGGTTATTAAGGAGGAGGTTTTGTGGCCAGTGCTGAGGTCAGATGCATTCAGTG
GGCTGACCGCCTTACCTAGAAGCATCCTTCTCTTCGGACCTCGGGGTACAGGCAAAACACTTTTGGGCAG
ATGCATAGCTAGTCAGCTAGGGGCCACGTTTTTCAAAATTGCCGGTTCCGGACTCGTTGCAAAGTGGATA
GGAGAAGCGGAGAAAATCATCCACGCCTCTTTTCTTGTGGCCAGGTGTCGCCAGCCCTCGGTGATTTTTG
TTAGTGACATTGACATGCTTCTCTCCTCTCAAGTGAGCGAGGAACACAGTCCAGTCAGTCGGATGAGAAC
CGAATTTCTGATGCAGCTGGACACTGTACTGACTTCGGCTGAGGACCAAATCGTAGTCATTTGTGCCACC
AGTAAACCAGAAGAAATAGATGAATCTCTTCGGAGGTACTTCATGAAAAGACTTTTAATCCCACTTCCTG
ACAGCACAGCGAGGCACCAGATAATAGTACAGCTGCTCACACAGCACAATTACTGTCTCAATGACAAGGA
GTTTGCACTGCTTGTCCAGCGCACAGAAGGCTTTTCTGGACTAGACGTGGCTCATTTGTGTCAGGAAGCA
GCAGTGGGACCTCTCCATGCTATGCCAGCTACAGACCTTTCAGCCATTATGCCCAGCCAGTTAAGGCCCG
TTACATATCAAGACTTTGAAAATGCTTTCTGCAAGATTCAGCCTAGCATATCTCAAAAAGAGCTTGATAT
GTATGTTGAATGGAACAAAATGTTTGGTTGCAGTCAGTGA

Translation (759 aa):
MISSTSVYGLKMQWTPEHAQWPEQHFDITSTTRSPAHKVEAYRGHLQRTYQYAWANDDISALTASNLLKK
YAEKYSGILEGPVDRPVLSNYSDTPSGLVNGRKNDSEPWQPSLNSEAVYPMNCVPDVITASKAGVSSALP
PVDVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPGYNGSYLHSTYSSQATPALPSPH
PSPLHSSGLLQPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVGSGYSPGGAPPPPSAYLPSGIP
APTPLPPTTVPGYTYQGHGLTPIAPSALTNNSASSLKRKAFYMAGQGDMDSSYGNYSYGQQRSTQSPMYR
MPDNSISNSNRGNGFDRNAETSSLAFKPTKQLMPSEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFG
KYTSPVMSEHGDDHRQLLAHPIQGPGLRAATSSNHSVDEQLKNTDTHLIDLVTNEIITQGPPVDWSDIAG
LDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWI
GEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICAT
SKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLTQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEA
AVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDMYVEWNKMFGCSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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