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Report for CCDS16045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16045.1 Public Mus musculus 2 Gpd2 23 108 98 CCDS HistoryNCBI Gene:14571Re-query CCDS DB by CCDS ID:16045.1Re-query CCDS DB by GeneID:14571See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028167.2 ENSMUSP00000028167.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028167.2Link to Ensembl Protein Viewer:ENSMUSP00000028167.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028167Re-query CCDS DB by Protein ID:ENSMUSP00000028167
Original member Current member EBI ENSMUST00000169687.7 ENSMUSP00000130992.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169687.7Link to Ensembl Protein Viewer:ENSMUSP00000130992.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169687Re-query CCDS DB by Protein ID:ENSMUSP00000130992
Original member Current member NCBI NM_001145820.1 NP_001139292.1 Accepted alive Link to Nucleotide Sequence:NM_001145820.1Link to Protein Sequence:NP_001139292.1Re-query CCDS DB by Nucleotide ID:NM_001145820Re-query CCDS DB by Protein ID:NP_001139292Link to BLAST:NP_001139292.1
Original member Current member NCBI NM_010274.3 NP_034404.3 Accepted alive Link to Nucleotide Sequence:NM_010274.3Link to Protein Sequence:NP_034404.3Re-query CCDS DB by Nucleotide ID:NM_010274Re-query CCDS DB by Protein ID:NP_034404Link to BLAST:NP_034404.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139292.1 727 Q64521 727 100% 0 0
NP_034404.3 727 Q64521 727 100% 0 0

Chromosomal Locations for CCDS 16045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 57267981 57268082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57289845 57290016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57304361 57304485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57305808 57305905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57306932 57307095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57338847 57339011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57340064 57340208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57345231 57345424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57355460 57355594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57355760 57355935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57356519 57356650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57357655 57357813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57364031 57364143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57364250 57364328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57364505 57364603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57367352 57367477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGCGTTTCAAAAGGCAGTGAAGGGGACTATTCTTGTGGGTGGAGGAGCTCTGGCCACTGTTTTGGGAC
TCTCTCCGTTTGCTCATTACAGAAGGAAGCAAGTGAGCCTGGCATATGTGGAAGCAGCAGGATACCTCAC
GGAGCCTGTGAACAGGGAACCTCCCTCCAGAGAAGCTCAGCTCATGACTTTGAAGAACACACCCGAATTT
GACATCCTTGTTATCGGAGGCGGAGCCACAGGGTGTGGCTGTGCACTAGATGCCGTCACCAGAGGACTGA
AAACAGCCCTTGTAGAGAGAGATGACTTCTCATCGGGGACTAGCAGTAGAAGCACTAAATTGATCCACGG
TGGTGTGCGATACCTCCAGAAGGCTATCATGAACTTGGATGTTGAGCAGTATAGGATGGTGAAAGAAGCC
CTTCACGAACGTGCCAACTTACTAGAAATCGCTCCTCATTTATCAGCTCCGTTGCCTATCATGCTTCCAC
TTTACAAGTGGTGGCAGTTACCTTATTACTGGGTGGGAATCAAGATGTATGACCTGGTTGCAGGGAGTCA
ATGCCTGAAGAGCAGTTACGTCCTCAGCAAATCCCGAGCCCTGGAGCATTTTCCCATGCTCCAGAAGGAC
AAGCTGGTAGGCGCCATTGTCTACTATGACGGACAACACAACGATGCACGGATGAACCTCGCCATCGCCC
TCACTGCTGCCAGGTACGGGGCTGCCACGGCCAATTACATGGAGGTGGTGAGCTTGCTCAAGAAGACAGA
CCCTGAAACCGGCAAAGAGCGAGTGAGCGGTGCGCGGTGCAAGGATGTGCTCACAGGGCAGGAATTTGAC
GTGAGAGCCAAATGCGTTATCAATGCCTCCGGCCCTTTCACAGACTCCGTGCGCAAAATGGATGATAAAA
ACGTTGTTCCCATCTGCCAGCCCAGTGCCGGGGTCCATATTGTGATGCCCGGATACTACAGCCCTGAGAA
CATGGGACTTCTTGATCCTGCAACCAGTGATGGCAGAGTGATTTTCTTCTTGCCTTGGGAGAAGATGACA
ATTGCTGGCACCACTGATACGCCAACGGACGTCACGCACCATCCTATTCCTTCAGAAGAAGACATTAACT
TCATCCTGAATGAAGTGCGGAACTACCTGAGTTCTGACGTTGAAGTGAGAAGAGGGGATGTCTTGGCAGC
CTGGAGTGGTATCCGTCCCCTTGTTACCGATCCCAAGTCTGCAGACACTCAGTCCATCTCTCGAAATCAT
GTTGTGGACATCAGTGACAGCGGACTCATCACAATAGCAGGTGGGAAGTGGACCACCTACCGCTCCATGG
CAGAAGATACCGTGGATGCAGCTGTCAAGTTTCACAACTTGAATGCGGGACCGAGTAGGACTGTTGGGCT
GTTCCTTCAAGGAGGCAAAGACTGGAGCCCCACACTCTACATCAGGCTTGTCCAGGATTATGGGCTTGAG
AGCGAGGTTGCACAACATCTGGCCAAAACCTATGGTGACAAGGCTTTCGAGGTGGCCAAAATGGCAAGTG
TGACTGGAAAGCGGTGGCCTGTTGTTGGAGTGCGTCTTGTGTCAGAATTTCCATACATTGAAGCAGAGGT
GAAATACGGGATTAAGGAGTATGCCTGCACTGCAGTTGACATGATCTCACGGCGCACCCGCCTGGCCTTT
CTCAATGTTCAGGCTGCAGAGGAAGCCCTGCCTAGGATTGTTGAACTAATGGGAAGAGAGTTGAACTGGA
GTGAATTGAGGAAACAGGAAGAACTTGAAACAGCCACGAGATTTCTGTACTATGAAATGGGCTACAAGTC
TCGAACAGAACAACTTACAGATAGCACTGAAATCAGCCTGCTGCCTTCAGACATCGATAGGTACAAGAAG
AGATTTCACAAGTTTGATGAAGATGAAAAAGGCTTCATTACCATTGTTGATGTTCAGCGTGTCCTAGAGA
GTATCAATGTACAAATGGACGAAAACACACTGCATGAAATTCTCTGCGAAGTAGATTTGAACAAAAATGG
ACAGGTTGAGCTGCACGAGTTTCTGCAGCTGATGAGCGCAGTTCAGAAAGGAAGGGTCTCTGGAAGCCGA
CTTGCCATCCTGATGAAAACTGCCGAGGAGAACTTGGACCGCAGAGTTCCAATCCCCGTGGACCGTAGTT
GTGGAGGATTGTGA

Translation (727 aa):
MAFQKAVKGTILVGGGALATVLGLSPFAHYRRKQVSLAYVEAAGYLTEPVNREPPSREAQLMTLKNTPEF
DILVIGGGATGCGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMNLDVEQYRMVKEA
LHERANLLEIAPHLSAPLPIMLPLYKWWQLPYYWVGIKMYDLVAGSQCLKSSYVLSKSRALEHFPMLQKD
KLVGAIVYYDGQHNDARMNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTGQEFD
VRAKCVINASGPFTDSVRKMDDKNVVPICQPSAGVHIVMPGYYSPENMGLLDPATSDGRVIFFLPWEKMT
IAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSSDVEVRRGDVLAAWSGIRPLVTDPKSADTQSISRNH
VVDISDSGLITIAGGKWTTYRSMAEDTVDAAVKFHNLNAGPSRTVGLFLQGGKDWSPTLYIRLVQDYGLE
SEVAQHLAKTYGDKAFEVAKMASVTGKRWPVVGVRLVSEFPYIEAEVKYGIKEYACTAVDMISRRTRLAF
LNVQAAEEALPRIVELMGRELNWSELRKQEELETATRFLYYEMGYKSRTEQLTDSTEISLLPSDIDRYKK
RFHKFDEDEKGFITIVDVQRVLESINVQMDENTLHEILCEVDLNKNGQVELHEFLQLMSAVQKGRVSGSR
LAILMKTAEENLDRRVPIPVDRSCGGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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