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Report for CCDS15970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15970.1 Public Mus musculus 2 Ptgs1 23 108 98 CCDS HistoryNCBI Gene:19224Re-query CCDS DB by CCDS ID:15970.1Re-query CCDS DB by GeneID:19224See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062069.5 ENSMUSP00000059977.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062069.5Link to Ensembl Protein Viewer:ENSMUSP00000059977.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062069Re-query CCDS DB by Protein ID:ENSMUSP00000059977
Original member Current member NCBI NM_008969.4 NP_032995.1 Accepted alive Link to Nucleotide Sequence:NM_008969.4Link to Protein Sequence:NP_032995.1Re-query CCDS DB by Nucleotide ID:NM_008969Re-query CCDS DB by Protein ID:NP_032995Link to BLAST:NP_032995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032995.1 602 P22437 602 100% 0 0

Chromosomal Locations for CCDS 15970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36230563 36230569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36230668 36230763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36237207 36237323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36237651 36237791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36237957 36238100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36240596 36240777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36240871 36240954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36242763 36243009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36245044 36245330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36249096 36249243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36250996 36251351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGAGTCGAAGGAGTCTCTCGCTCTGGTTTCCCCTGCTGCTGCTCCTGCTGCTGCCGCCGACACCCTCGG
TCCTGCTCGCAGATCCTGGGGTGCCCTCACCAGTCAATCCCTGTTGTTACTATCCGTGCCAGAACCAGGG
TGTCTGTGTCCGCTTTGGCCTCGACAACTACCAGTGTGATTGTACTCGCACGGGCTACTCAGGCCCCAAC
TGTACCATCCCTGAGATCTGGACCTGGCTTCGGAATTCTCTGCGGCCCAGCCCCTCGTTCACCCATTTCC
TGCTGACACATGGATACTGGCTCTGGGAATTTGTGAATGCCACCTTCATCCGAGAAGTACTCATGCGCCT
GGTACTCACAGTGCGGTCCAACCTTATCCCCAGCCCTCCGACCTACAACTCAGCGCATGACTACATCAGC
TGGGAGTCCTTCTCCAATGTGAGCTACTATACTCGCATTCTGCCCTCTGTACCCAAAGACTGCCCCACAC
CCATGGGGACCAAAGGGAAGAAACAGTTACCAGATGTTCAGCTTCTGGCCCAACAGCTGCTGCTGAGAAG
GGAGTTCATTCCTGCCCCCCAGGGCACCAACATCCTGTTTGCCTTCTTTGCACAACACTTCACCCACCAG
TTCTTCAAGACCTCTGGAAAGATGGGTCCTGGCTTTACCAAGGCCTTAGGCCACGGGGTAGACCTTGGCC
ACATTTATGGAGATAATCTGGAACGACAGTATCACCTGCGGCTCTTCAAGGATGGGAAACTTAAGTACCA
GGTGCTGGACGGAGAGGTGTACCCACCTTCCGTGGAACAGGCGTCCGTGTTGATGCGCTACCCACCAGGT
GTCCCGCCTGAAAGGCAGATGGCTGTGGGCCAGGAGGTGTTTGGGTTGCTTCCGGGGCTGATGCTCTTCT
CCACGATCTGGCTTCGTGAACATAACCGCGTGTGCGACCTGCTGAAGGAGGAGCATCCCACGTGGGATGA
TGAGCAGCTCTTCCAGACCACTCGCCTCATCCTTATAGGAGAAACCATCAAAATTGTCATTGAGGAGTAT
GTGCAGCACTTGAGTGGCTATTTCCTGCAGCTCAAGTTTGACCCGGAGCTGCTGTTCCGAGCCCAGTTCC
AATATCGAAACCGCATCGCCATGGAATTTAACCATCTCTATCACTGGCATCCACTCATGCCCAACTCCTT
CCAAGTGGGCTCACAAGAGTACAGCTACGAGCAGTTTTTATTTAACACTTCTATGCTGGTGGACTATGGG
GTTGAGGCACTGGTGGATGCCTTCTCTCGCCAGAGGGCTGGCCGGATTGGTGGAGGTAGGAACTTTGACT
ATCATGTTCTGCATGTGGCTGTGGATGTCATCAAGGAGTCCCGAGAGATGCGCCTACAGCCCTTCAATGA
ATACCGAAAGAGGTTTGGCTTGAAGCCTTACACCTCTTTCCAGGAGCTCACAGGAGAGAAGGAGATGGCT
GCTGAGTTGGAGGAGCTGTACGGTGACATCGATGCTTTAGAGTTCTACCCGGGGTTGCTGCTGGAGAAGT
GCCAGCCCAACTCCATCTTTGGAGAAAGTATGATAGAGATGGGGGCTCCCTTTTCCCTCAAGGGCCTCCT
AGGGAATCCCATCTGTTCCCCAGAGTACTGGAAACCCAGCACGTTCGGTGGTGACGTGGGCTTCAACCTT
GTCAACACAGCCTCACTGAAGAAACTGGTCTGCCTCAACACCAAGACCTGCCCCTATGTTTCCTTCCGTG
TGCCAGATTACCCTGGAGATGACGGGTCTGTCTTAGTGAGACGCTCCACTGAGCTCTGA

Translation (602 aa):
MSRRSLSLWFPLLLLLLLPPTPSVLLADPGVPSPVNPCCYYPCQNQGVCVRFGLDNYQCDCTRTGYSGPN
CTIPEIWTWLRNSLRPSPSFTHFLLTHGYWLWEFVNATFIREVLMRLVLTVRSNLIPSPPTYNSAHDYIS
WESFSNVSYYTRILPSVPKDCPTPMGTKGKKQLPDVQLLAQQLLLRREFIPAPQGTNILFAFFAQHFTHQ
FFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYHLRLFKDGKLKYQVLDGEVYPPSVEQASVLMRYPPG
VPPERQMAVGQEVFGLLPGLMLFSTIWLREHNRVCDLLKEEHPTWDDEQLFQTTRLILIGETIKIVIEEY
VQHLSGYFLQLKFDPELLFRAQFQYRNRIAMEFNHLYHWHPLMPNSFQVGSQEYSYEQFLFNTSMLVDYG
VEALVDAFSRQRAGRIGGGRNFDYHVLHVAVDVIKESREMRLQPFNEYRKRFGLKPYTSFQELTGEKEMA
AELEELYGDIDALEFYPGLLLEKCQPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKPSTFGGDVGFNL
VNTASLKKLVCLNTKTCPYVSFRVPDYPGDDGSVLVRRSTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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