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Report for CCDS15933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15933.1 Public Mus musculus 2 Stxbp1 23 108 98 CCDS HistoryNCBI Gene:20910Re-query CCDS DB by CCDS ID:15933.1Re-query CCDS DB by GeneID:20910See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050000.15 ENSMUSP00000052440.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050000.15Link to Ensembl Protein Viewer:ENSMUSP00000052440.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000050000Re-query CCDS DB by Protein ID:ENSMUSP00000052440
Original member Current member NCBI NM_009295.2 NP_033321.2 Accepted alive Link to Nucleotide Sequence:NM_009295.2Link to Protein Sequence:NP_033321.2Re-query CCDS DB by Nucleotide ID:NM_009295Re-query CCDS DB by Protein ID:NP_033321Link to BLAST:NP_033321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033321.2 594 O08599-1 594 100% 0 0

Chromosomal Locations for CCDS 15933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32789555 32789637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32796016 32796170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32798105 32798190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32800580 32800681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32801820 32801929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32802754 32802892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32806069 32806149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32806721 32806786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32808002 32808062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32809101 32809208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32811105 32811235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32812021 32812105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32814879 32815027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32817286 32817389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32818427 32818505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32819834 32819910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32821835 32821916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32823536 32823585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32847055 32847091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGCCCCCATTGGCCTCAAGGCGGTGGTCGGAGAGAAGATCATGCATGATGTGATCAAGAAGGTGAAGA
AGAAGGGCGAGTGGAAGGTGCTGGTGGTGGACCAGTTAAGCATGAGGATGCTGTCCTCCTGCTGCAAGAT
GACAGACATCATGACCGAGGGCATCACAATTGTGGAGGATATCAACAAGCGCCGAGAGCCACTCCCCAGC
CTGGAGGCCGTGTACCTCATCACCCCATCTGAGAAGTCTGTCCACTCTCTGATCAGTGATTTTAAGGACC
CGCCGACTGCTAAATATCGGGCTGCGCATGTGTTCTTCACAGACTCGTGTCCAGATGCCCTATTTAACGA
GCTGGTAAAATCCCGAGCAGCCAAAGTCATCAAGACGCTGACGGAAATCAACATTGCGTTTCTCCCCTAT
GAGTCCCAGGTGTATTCCCTGGACTCCGCTGACTCTTTCCAAAGCTTCTACAGCCCTCACAAGGCGCAGA
TGAAGAATCCGATACTGGAACGCCTGGCAGAGCAGATCGCAACCCTGTGTGCCACCCTGAAGGAGTATCC
AGCTGTGCGGTATCGGGGGGAGTACAAGGACAATGCCTTGCTGGCTCAGCTGATCCAGGACAAGCTGGAT
GCCTATAAAGCCGACGATCCAACAATGGGGGAGGGTCCCGACAAGGCACGGTCCCAGCTCCTGATCCTGG
ATCGTGGCTTTGACCCCAGCTCCCCTGTGCTCCATGAACTGACATTCCAGGCTATGAGTTATGACCTGCT
GCCTATCGAAAATGATGTTTACAAGTATGAGACCAGCGGCATTGGAGAGGCGCGGGTGAAGGAGGTGCTA
CTGGATGAGGACGATGACCTGTGGATTGCGCTGCGACACAAGCACATCGCAGAGGTGTCCCAGGAAGTCA
CCCGGTCTCTGAAGGACTTTTCCTCTAGCAAGAGGATGAACACTGGCGAGAAGACCACCATGCGGGACCT
GTCCCAGATGCTGAAGAAAATGCCCCAGTACCAGAAGGAGCTCAGCAAGTATTCGACTCACCTGCACCTT
GCTGAAGACTGCATGAAGCATTACCAAGGCACTGTAGACAAACTCTGCCGCGTGGAGCAGGACCTGGCAA
TGGGCACAGATGCTGAGGGGGAAAAAATCAAGGACCCCATGAGAGCCATTGTCCCCATCCTGCTGGATGC
GAACGTCAGCACTTACGACAAAATCCGTATCATCCTTCTCTACATCTTCCTGAAGAACGGTATCACTGAG
GAGAACCTAAACAAACTCATCCAGCACGCTCAGATACCCCCAGAGGACAGCGAGATCATCACCAACATGG
CTCACCTCGGCGTGCCCATCGTCACGGATTCCACACTACGCCGCCGAAGCAAACCGGAGCGGAAGGAGCG
TATCAGTGAGCAGACCTACCAGCTCTCACGATGGACCCCGATCATTAAAGACATTATGGAGGACACTATC
GAAGACAAGCTGGATACAAAGCACTACCCATACATCTCTACCCGCTCGTCCGCGTCCTTCAGCACCACTG
CTGTGAGTGCCCGCTATGGACATTGGCACAAGAATAAGGCCCCCGGGGAGTACCGCAGCGGTCCCCGCCT
CATTATTTTCATCCTTGGGGGTGTGAGCCTGAATGAGATGCGCTGTGCTTACGAAGTGACCCAGGCCAAC
GGCAAGTGGGAAGTGCTGATAGGATCCACGCACATTCTCACCCCACAGAAACTGCTGGACACGCTGAAGA
AGCTGAATAAAACAGATGAAGAAATAAGCAGTTAA

Translation (594 aa):
MAPIGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS
LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPY
ESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLD
AYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVL
LDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHL
AEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITE
ENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIKDIMEDTI
EDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQAN
GKWEVLIGSTHILTPQKLLDTLKKLNKTDEEISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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