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Report for CCDS15882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15882.1 Public Mus musculus 2 Crat 23 108 98 CCDS HistoryNCBI Gene:12908Re-query CCDS DB by CCDS ID:15882.1Re-query CCDS DB by GeneID:12908See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028207.12 ENSMUSP00000028207.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028207.12Link to Ensembl Protein Viewer:ENSMUSP00000028207.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028207Re-query CCDS DB by Protein ID:ENSMUSP00000028207
Original member Current member EBI ENSMUST00000102855.7 ENSMUSP00000099919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102855.7Link to Ensembl Protein Viewer:ENSMUSP00000099919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102855Re-query CCDS DB by Protein ID:ENSMUSP00000099919
Original member NCBI NM_007760.3 NP_031786.2 Updated not alive Link to Nucleotide Sequence:NM_007760.3Link to Protein Sequence:NP_031786.2Re-query CCDS DB by Nucleotide ID:NM_007760Re-query CCDS DB by Protein ID:NP_031786
Current member NCBI NM_007760.4 NP_031786.2 Accepted alive Link to Nucleotide Sequence:NM_007760.4Link to Protein Sequence:NP_031786.2Re-query CCDS DB by Nucleotide ID:NM_007760Re-query CCDS DB by Protein ID:NP_031786Link to BLAST:NP_031786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031786.2 626 P47934 626 100% 0 0

Chromosomal Locations for CCDS 15882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30402578 30402793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30403489 30403626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30404528 30404590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30404938 30405073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30405166 30405288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30405385 30405504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30406368 30406468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30406956 30407134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30407706 30407880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30408056 30408221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30408741 30408794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30409957 30410075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30412983 30413246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30415312 30415338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGTTAGCCTTTGCTGCCAGAACCGTGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGG
TTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCT
GGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTG
GATGAGTTTCAGACCTCAGGGGGCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAA
TGGAGAACTGGCTGTCCGAGTGGTGGCTCAAGACAGCCTATCTCCAGTTCCGCCAGCCTGTGGTCATCTA
CTCCAGCCCAGGAGTGATCCTGCCCAAGCAGGACTTTGTGGATCTACAGGGTCAGCTTCGGTTTGCTGCC
AAACTCATCGAGGGTGTATTGGATTTCAAGTCCATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGG
GAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAGCA
GGACTCAGTGGTGAACTTCTTAAAGTCAAAGAGACCACCCACGCATATAACCGTGGTGCATAACTACCAG
TTCTTCGAGCTGGATGTGTACCACAGTGACGGAACACCGCTCACCTCAGATCAGATCTTTGTGCAGCTAG
AGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAA
CACCTGGGCCAAGGCCTACAACAACCTCATTAAAGACAAAGTTAACCGAGAGTCAGTGAACTCCATACAG
AAGAGCATCTTCACCGTGTGCCTGGACAAGCAAGTGCCTAGAGTCTCAGATGATGTCTACCGAAACCACG
TAGCAGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACT
GCAGTTCATCGTGGCAGAAGACGGCTCCTGTGGGATGGTGTATGAGCATGCAGCTGCAGAAGGGCCCCCC
ATAGTTGCACTTGTGGACCATGTCATGGAGTATACAAAAAAGCCTGAGCTTGTGCGGTCTCCTATGGTGC
CCTTGCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAACGACATAGAGAAAGCCAA
ACAGAACCTCAGCATCATGATCCAGGACCTGGACATCATGATGCTGACGTTCCATCACTTTGGAAAGGAC
TTCCCCAAGTCCGAGAAGCTAAGCCCTGATGCCTTCATCCAGGTAGCCCTGCAGCTGGCATACTACAGGA
TCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGACAC
CATCCGCTCAGCCTCCATAGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCGGAGCAG
CAGAAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCACCGAGCCTACACTGACCGGGCCATCCGAGGGG
AGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCTGGTCAGCATGCCTGACAT
CTTCATGGACACCTCTTACGCCATTGCTATGCACTTCAACCTCTCTACCAGCCAGGTCCCTGCCAAGACA
GACTGTGTCATGTTCTTCGGACCTGTGGTCCCAGATGGTTATGGCATCTGCTACAACCCCATGGAGGCCC
ATATCAACTTCTCCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCACTACTT
GGAGAAAGCTCTGCTGGACATGCGCACCCTACTCCAGAACCACCCCAGGGCCAAGCTCTGA

Translation (626 aa):
MLAFAARTVVKPLGLLKPSSLMKVSGRFKAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLV
DEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAA
KLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQ
FFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQ
KSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPP
IVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKD
FPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQ
QKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKT
DCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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