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Report for CCDS15874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15874.1 Public Mus musculus 2 Kyat1 23 108 98 CCDS HistoryNCBI Gene:70266Re-query CCDS DB by CCDS ID:15874.1Re-query CCDS DB by GeneID:70266See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044038.9 ENSMUSP00000038612.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044038.9Link to Ensembl Protein Viewer:ENSMUSP00000038612.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044038Re-query CCDS DB by Protein ID:ENSMUSP00000038612
Original member Current member EBI ENSMUST00000113661.9 ENSMUSP00000109291.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113661.9Link to Ensembl Protein Viewer:ENSMUSP00000109291.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113661Re-query CCDS DB by Protein ID:ENSMUSP00000109291
Original member Current member EBI ENSMUST00000113662.7 ENSMUSP00000109292.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113662.7Link to Ensembl Protein Viewer:ENSMUSP00000109292.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113662Re-query CCDS DB by Protein ID:ENSMUSP00000109292
Original member Current member EBI ENSMUST00000113663.8 ENSMUSP00000109293.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113663.8Link to Ensembl Protein Viewer:ENSMUSP00000109293.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113663Re-query CCDS DB by Protein ID:ENSMUSP00000109293
Original member Current member NCBI NM_001356474.1 NP_001343403.1 Accepted alive Link to Nucleotide Sequence:NM_001356474.1Link to Protein Sequence:NP_001343403.1Re-query CCDS DB by Nucleotide ID:NM_001356474Re-query CCDS DB by Protein ID:NP_001343403Link to BLAST:NP_001343403.1
Original member Current member NCBI NM_172404.3 NP_765992.2 Accepted alive Link to Nucleotide Sequence:NM_172404.3Link to Protein Sequence:NP_765992.2Re-query CCDS DB by Nucleotide ID:NM_172404Re-query CCDS DB by Protein ID:NP_765992Link to BLAST:NP_765992.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343403.1 424 Q8BTY1 424 100% 0 0
NP_765992.2 424 Q8BTY1 424 100% 0 0

Chromosomal Locations for CCDS 15874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30185504 30185569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30185667 30185753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30186192 30186271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30186357 30186543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30186646 30186735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30186833 30186909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30187187 30187307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30187689 30187817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30188053 30188139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30188215 30188364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30191925 30192072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30194054 30194106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGTCCAAACAGCTGCAGGCTCGAAGGCTGGAAGGGATCGATCACAACCCCTGGGTGGAGTTTACCAGAC
TGTCCAAGGAGTATGATGTCGTGAACTTGGGCCAGGGCTTCCCTGACTTCTCACCGCCAGACTTTGCTGT
GCAAGCTTTTCAGCAGGCTACCACTGGGAACTTCATGCTCAACCAGTACACCTCAGCGTTTGGTTACCCT
CCACTGACAAAGATCCTGGCAAGTTTCTTTGGCAAGCTGCTGGGACAGGAGATGGACCCACTCAAGAATG
TGCTGGTGACAGTGGGAGCCTATGGGGCCTTGTTCACAGCCTTTCAGGCCCTGGTGGATGAAGGAGACGA
GGTCATCATCATCGAACCTGCTTTTAATTGTTACGAACCCATGACAATGATGGCTGGAGGTCGCCCTGTG
TTCGTGTCCCTGAGGCTGAGTCCTGCTCCTAAGGGGCAGCTGGGATCCAGCAATGATTGGCAGCTGGACC
CCACAGAACTGGCCAGCAAGTTCACACCTCGCACCAAGATCCTGGTCCTCAACACACCCAACAACCCTCT
GGGAAAGGTATTCTCTAAGAAGGAGCTGGAGCTGGTGGCTGCACTGTGCCAACAGCATGATGTCCTGTGC
TTCTCTGATGAGGTCTACCAGTGGCTGGTCTATGATGGGCACCAGCACATCAGCATTGCCAGCCTCCCTG
GCATGTGGGAACGGACACTGACCATCGGCAGCGCAGGCAAAAGCTTCAGTGCCACTGGCTGGAAGGTGGG
CTGGGTCATGGGTCCAGATAACATCATGAAGCACCTGCGGACTGTGCACCAGAACTCTATCTTTCACTGC
CCCACCCAGGCCCAGGCTGCAGTAGCCCAGTGCTTTGAGCGGGAGCAGCAACACTTTGGACAACCCAGCA
GTTACTTTTTGCAGCTGCCACAGGCCATGGGCCTGAACCGAGACCACATGATCCAGAGCCTGCAGTCAGT
GGGCCTCAAGCCCTTGATCCCCCAGGGCAGCTACTTCCTCATTGCAGACATCTCAGACTTCAAGAGCAGC
ATGCCCGACCTGCCTGGTGCTATGGATGAGCCCTATGATACACGCTTTGCCAAGTGGATGATCAAAAACA
AGGGGCTGTCAGCCATCCCTGTCTCCACCTTCTATAGCCAGCCCCATCATAAGGACTTTGACCACTACAT
CCGATTCTGTTTTGTGAAGGACAAGGCTACACTCCAGGCCATGGATAAGAGGCTGTGCAGCTGGAAAGGA
GAGCCCCAAGCCTGA

Translation (424 aa):
MSKQLQARRLEGIDHNPWVEFTRLSKEYDVVNLGQGFPDFSPPDFAVQAFQQATTGNFMLNQYTSAFGYP
PLTKILASFFGKLLGQEMDPLKNVLVTVGAYGALFTAFQALVDEGDEVIIIEPAFNCYEPMTMMAGGRPV
FVSLRLSPAPKGQLGSSNDWQLDPTELASKFTPRTKILVLNTPNNPLGKVFSKKELELVAALCQQHDVLC
FSDEVYQWLVYDGHQHISIASLPGMWERTLTIGSAGKSFSATGWKVGWVMGPDNIMKHLRTVHQNSIFHC
PTQAQAAVAQCFEREQQHFGQPSSYFLQLPQAMGLNRDHMIQSLQSVGLKPLIPQGSYFLIADISDFKSS
MPDLPGAMDEPYDTRFAKWMIKNKGLSAIPVSTFYSQPHHKDFDHYIRFCFVKDKATLQAMDKRLCSWKG
EPQA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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