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Report for CCDS15812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15812.1 Public Mus musculus 2 Surf6 23 108 98 CCDS HistoryNCBI Gene:20935Re-query CCDS DB by CCDS ID:15812.1Re-query CCDS DB by GeneID:20935See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047632.13 ENSMUSP00000048457.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047632.13Link to Ensembl Protein Viewer:ENSMUSP00000048457.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047632Re-query CCDS DB by Protein ID:ENSMUSP00000048457
Original member Current member NCBI NM_009298.4 NP_033324.1 Accepted alive Link to Nucleotide Sequence:NM_009298.4Link to Protein Sequence:NP_033324.1Re-query CCDS DB by Nucleotide ID:NM_009298Re-query CCDS DB by Protein ID:NP_033324Link to BLAST:NP_033324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033324.1 355 P70279 355 100% 0 0

Chromosomal Locations for CCDS 15812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26892246 26892725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26892867 26893067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26899337 26899425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26899729 26899932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26902694 26902787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGCTTCTCTCCTGGCCAAGGATACCTATCTTCAGGACTTGGCCAAGAAGATCTGCGCGCAGCCTGGCC
CTGAACGACAGAGGAGCACATGGGGTGTCAGAACAAAAGGCTCAGAAGCTGCTGGCGCCCCCAAAAAGAA
AAGGAAGAAAACACAAAAGAAGTCTCCGGAGCAGGAACAGAAAGCTATGGATCACAAGACTAAAGCCCTG
GGCAAGAAGCCTCCTACCTCTTCTAGGCCCAAGAACCCAATGGTATCCAAACAAGAGAAGGGCTTGAGCT
CCCTGGGGTCCCCTAAAGATAGCCAAGGCACAGCACGGGAGTCTGTCTTTGCACTGGATTTTCTGCGACA
GCGGCTGCATGAAAAGATCCAGCTGGCCCGGGGCCAGGGTAGCACCAAGGAGTTGTCTGCTGCCACTCTC
GAGAAAAGACAGCGGAGAAAGCAGGAGAGGGAACGGAAGAAGAGGAAGAGGAAGGAGCGCCAAGCAAAGC
AGCAGGTTGCAGAGGCTGAGAAAAAGGAGGAGCCAGTAGAGGTGACCCCCAAAATGGCCTGCAAGGAGCT
GCAGGAATCAGGGCTGATCTTTAACAAGGTGGAAGTGACTGAAGAGGAGCCAGCCAGCAAGGCCCAGCGC
AAGAAGGAGAAGAGGCAGAAAGTGAAAGGGAACCTGACACCGCTCACAGGCAGGAACTACAGGCAGCTGT
TGGACCGTCTGCAGGCACGGCAGGGCCGCCTGGACGAGCTTCGTGATCAGGATGCAGCCAAGGCCCAGGA
GCTGGAGGCCAAGATGAAGTGGACCAACTTGCTGTACAAGGCTGAGGGTGTGAAGATCAGGGATGACGAA
CGCCTGCTGCAGGAAGCCCTGAAGCGCAAAGAGAAGCGCCGGGCACAGCGGCAGCGCAAGTGGGAGAAGC
GTTCAGAGCATGTGGTGGAGAAGATGCAGCAGCGACAGGACAAGCGGCGCCAGAACCTGCGCAAGAAGAA
GGCAGCTCGGGCTGAGCGACGGCTACAGAAGGCCCACAAGAAGGGCCGGGTGCTTCCCCAGGACCTGGAG
CGTGCAGGCCTCTCCTGA

Translation (355 aa):
MASLLAKDTYLQDLAKKICAQPGPERQRSTWGVRTKGSEAAGAPKKKRKKTQKKSPEQEQKAMDHKTKAL
GKKPPTSSRPKNPMVSKQEKGLSSLGSPKDSQGTARESVFALDFLRQRLHEKIQLARGQGSTKELSAATL
EKRQRRKQERERKKRKRKERQAKQQVAEAEKKEEPVEVTPKMACKELQESGLIFNKVEVTEEEPASKAQR
KKEKRQKVKGNLTPLTGRNYRQLLDRLQARQGRLDELRDQDAAKAQELEAKMKWTNLLYKAEGVKIRDDE
RLLQEALKRKEKRRAQRQRKWEKRSEHVVEKMQQRQDKRRQNLRKKKAARAERRLQKAHKKGRVLPQDLE
RAGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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