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Report for CCDS15737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15737.1 Public Mus musculus 2 Psd4 23 108 98 CCDS HistoryNCBI Gene:215632Re-query CCDS DB by CCDS ID:15737.1Re-query CCDS DB by GeneID:215632See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056641.14 ENSMUSP00000062415.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056641.14Link to Ensembl Protein Viewer:ENSMUSP00000062415.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056641Re-query CCDS DB by Protein ID:ENSMUSP00000062415
Original member Current member EBI ENSMUST00000102942.7 ENSMUSP00000100006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102942.7Link to Ensembl Protein Viewer:ENSMUSP00000100006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102942Re-query CCDS DB by Protein ID:ENSMUSP00000100006
Original member Current member EBI ENSMUST00000166388.1 ENSMUSP00000132395.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166388.1Link to Ensembl Protein Viewer:ENSMUSP00000132395.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166388Re-query CCDS DB by Protein ID:ENSMUSP00000132395
Original member Current member NCBI NM_001355231.1 NP_001342160.1 Accepted alive Link to Nucleotide Sequence:NM_001355231.1Link to Protein Sequence:NP_001342160.1Re-query CCDS DB by Nucleotide ID:NM_001355231Re-query CCDS DB by Protein ID:NP_001342160Link to BLAST:NP_001342160.1
Original member Current member NCBI NM_001355232.1 NP_001342161.1 Accepted alive Link to Nucleotide Sequence:NM_001355232.1Link to Protein Sequence:NP_001342161.1Re-query CCDS DB by Nucleotide ID:NM_001355232Re-query CCDS DB by Protein ID:NP_001342161Link to BLAST:NP_001342161.1
Original member Current member NCBI NM_177611.4 NP_808279.1 Accepted alive Link to Nucleotide Sequence:NM_177611.4Link to Protein Sequence:NP_808279.1Re-query CCDS DB by Nucleotide ID:NM_177611Re-query CCDS DB by Protein ID:NP_808279Link to BLAST:NP_808279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342160.1 1005 Q8BLR5 1005 100% 0 0
NP_001342161.1 1005 Q8BLR5 1005 100% 0 0
NP_808279.1 1005 Q8BLR5 1005 100% 0 0

Chromosomal Locations for CCDS 15737.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24394126 24395040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24396305 24396433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24396677 24396785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24397211 24397565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24400421 24400600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24401014 24401094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24401221 24401333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24401524 24401582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24401732 24401821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24402871 24402914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24403200 24403360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24404382 24404452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24404737 24404900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24405307 24405451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24405687 24405830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24406977 24407234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3018 nt):
ATGATGGGGGACCACCTCAGACCCATGGAATGTCTCAATATTTGCTTGGAAGACAACTTACAACCCTGTC
CAGAAGCATATCCAAGTGAAATACATGGCCATCCAGGCCCTTCTGAACCTTGCCAGGAACATACCTGTCC
GTTTGACCCCCCAGAATCTGCCAGACCTGATGCTCCTCATGGTAACTCTGGTGTGGAGTCCACTCATCTA
GAAAACTGCTTGGTGCAGGTACAGGCTAGGCAGGCCTCAGCATCACTGAGGTCACTGGAGGACAACAGCT
CTTTGGGGAGTCCACAGCAAAACCAGAGCTCATCCACCCAGGTGGTATTCTGGGCTGGCATCCTGCAGGC
CCAGATGTGTGTCCTGGACCTGGAGGAGGAGCTGGAGAAAACAGAGGGACTCAGAGCAGAACTCAGGTGC
TGCATCCCACCACCCTCTAAGGACCTCCTTGGAGATGAAGGTCTGAGCCCCAGCCGACCCGAGGAGGATG
AAGACTCTGGAGATGACAGCAGTGGGCCTGAGGAGGAGAACCAGACCTGGCCAAGGGAGAAAATTCCAGG
CTCCTCCCTAGAGTGGGGTGCTGAGGAGGACAGTATCTTCTTTGATAATCCCCTCTTCCTGGAGAGCCCT
TGCTCAGACACCAGCACTGAAGGAGAATGCTTTTCCTGGGGGTACCCGAATTCCCACCCAGACATGAAGA
CCTGGCATCAGAGCCCTCAAACTCTGGACTCTCCTCTCCAAAAAGGCACAGGGCTCTGGAGGCAAGAAAA
TGAGCTGGATTTGGGGAGCGACACTGCTGACCATGGTGGGTGTTCCACCCCTCCATTCCCTGTGCCTTCC
TATAAGATGCACCCCTGCTTGGCCTTAGGATCCACTGAAGGGGATCCCACGGTACCTCCTGATCAGGAGG
GTGAGACTTCTTGTGAAGATGATCTTGGCCATGGCTCACCTAAAGCACCCTTTGTAGACCATGAATTGAT
CCAAGAATCAGATAACTTTGAATTTGACCTTAGACCTGCCACAACACATCCTGTACAGCCTTGGGGTTCA
CAGACATCCCAAAGCCTTTCTGACCTGACTCAACCCATACTTGAGGACCTGCAGAGAGAAGATCCTTCCA
GGTCCCAGGAAACTCTTATCTCCCAGAACAGAGGTGAGAGGGATGCTGGCTGTTTCCAGGAGCCCGTGTT
CTGCACTTTGGCCCCCTGGGGGAGCCAAACCTCTTTACTGGAGCCTAACTGCCCAGAATCTGAGGGTAGA
GGCTCTGGCCCCCAGCCCAGCCCAGTGTCTTCCCAGGATAGCAGCCCACGGGTTCTGCTGCACAGCCCCA
AGTGGCCACAAGATGCCTCACACCTTCTCCAGAAGGATAGATCAGAGTTGAGCTCCCTAAAGGAAGAGGA
GACAGAGGAGGTCCCAAGCCTGAGGCAGGAGGCAGAATGTGAAGATACATCCAGAAGTGAAGATGCTTCA
GCCAACCAGCACCATGTTCACTTGGCTTCTGCAGAAGGGCTTCCTGAGAGCCCCATGCCCCAAGCTCAAT
CTCCAGAGGAAGGCTGGAGGCCATCATCGTCTAGAGAGAAGTTGGCTAATGACATCAGAAATGACAAGGG
AGCATGGAACCTAGCCCTGCGCCTCTATCAACTGAATGGTTTTCGGAAGTCTGAAGTAGCTGCCCACCTA
CGCAAGAACAATGACTTCAGCAGGGCTGTAGCCGAGGCCTACTTGTCTTTCTTCCAGTTCGAAGGTCAGA
GCCTGGACAGAGCCCTCCGTGGTTTCCTCCAGGCCCTGGTGCTCAGTGGAGAGACTCAGGAGCGGGAACG
AATTCTCTACCAGTTTTCCAAACGTTTCCATTACTGCAATCCTGGAGCCTTCCCCTCAGTAGATTCTGTT
CACACGTTGACCTGTGCAATCATGCTCCTTAACACAGACCTACATGGGCAGAACATTGGCAAGAGCATGA
GCTGTCAGGAATTTGTAACCAACTTGAATGGCCTGCAGGATGGCAGGAACTTCCCCAAAGAGCTGCTGAA
GGCCCTCTACTGGTCTATCCGCAGTGAGAAGCTCGAATGGGCTATAGATGAAGAAGATGCAGACAGACCC
GAGAAGGACCAACCCTCTCCCTCAGCTGGCAAGATAAGCAGCCCCTTCCTGCAGATGGCTCAGGATCCCA
CGATGCCCACCTATAAGCAGGGCATTCTGGCTCGGAAGATGCATCACATTGCTGATGGCAAGAAGACTCC
ATGGGGCAAACGAGGCTGGAAGATGTTTCACACCTTACTGAGAGGGATGGTCCTCTACTTCCTGAAGGGA
GAGGGCCAATGGCTGGATGGAGAGAGTTTGGTAGGACATATGGTGGATGAGCCTGTGGGAGTACACCACT
CACTAGCCAGCCCAGCCACCCACTACACCAAGAAGCCACATGTCTTCCAGCTTCGGACTGCAGACTGGCG
TCTCTACCTCTTCCAGGCACCTACTGCCAAAGAAATGGCTTCCTGGATTGCGCGAATCAACCTGGCGGCT
GCCACCCACTCAGCACCTCCTTTTCCGGCTGCAGTGGGCTCCCAACGCAGATTCGTGAGGCCCATCCTGC
CCATGAGCCCGGTGCAGAGCTCCCTGGAGGAGCAGCATCGATCCCACGAGAACTGCCTGGATGCTGCCTC
AGATGACCTGTTGGATTTGCAGAGGAACCTGCCGGAGCGACGGGGCCGCAGCCGCGAGCTGGAGGAATAC
CGCTTACGGAAGGAGTATCTGGAGCACGAGAAAACTCGATATGAGACCTACGTACAGCTTCTGGTGGCCC
GCCTACACTTCCCTTTGGGGGACCTGGCTCTGTGGGAAGATCAGCTTGGGAAGGAAACTGACGGTTCTCA
GGAGCCCAGGCCAAGCCTGAAGAAGTCCCACTCAAGCCCATCACTGCACCAGGAGGAGGCCCCCACCACA
GCCAAGGTGAAACGCAACATCTCAGAGCGCAGAACCTACCGGAAGATCATTCCCAAGAGGAACCGCAATC
AGCTGTGA

Translation (1005 aa):
MMGDHLRPMECLNICLEDNLQPCPEAYPSEIHGHPGPSEPCQEHTCPFDPPESARPDAPHGNSGVESTHL
ENCLVQVQARQASASLRSLEDNSSLGSPQQNQSSSTQVVFWAGILQAQMCVLDLEEELEKTEGLRAELRC
CIPPPSKDLLGDEGLSPSRPEEDEDSGDDSSGPEEENQTWPREKIPGSSLEWGAEEDSIFFDNPLFLESP
CSDTSTEGECFSWGYPNSHPDMKTWHQSPQTLDSPLQKGTGLWRQENELDLGSDTADHGGCSTPPFPVPS
YKMHPCLALGSTEGDPTVPPDQEGETSCEDDLGHGSPKAPFVDHELIQESDNFEFDLRPATTHPVQPWGS
QTSQSLSDLTQPILEDLQREDPSRSQETLISQNRGERDAGCFQEPVFCTLAPWGSQTSLLEPNCPESEGR
GSGPQPSPVSSQDSSPRVLLHSPKWPQDASHLLQKDRSELSSLKEEETEEVPSLRQEAECEDTSRSEDAS
ANQHHVHLASAEGLPESPMPQAQSPEEGWRPSSSREKLANDIRNDKGAWNLALRLYQLNGFRKSEVAAHL
RKNNDFSRAVAEAYLSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSV
HTLTCAIMLLNTDLHGQNIGKSMSCQEFVTNLNGLQDGRNFPKELLKALYWSIRSEKLEWAIDEEDADRP
EKDQPSPSAGKISSPFLQMAQDPTMPTYKQGILARKMHHIADGKKTPWGKRGWKMFHTLLRGMVLYFLKG
EGQWLDGESLVGHMVDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMASWIARINLAA
ATHSAPPFPAAVGSQRRFVRPILPMSPVQSSLEEQHRSHENCLDAASDDLLDLQRNLPERRGRSRELEEY
RLRKEYLEHEKTRYETYVQLLVARLHFPLGDLALWEDQLGKETDGSQEPRPSLKKSHSSPSLHQEEAPTT
AKVKRNISERRTYRKIIPKRNRNQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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