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Report for CCDS15659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15659.1 Public Mus musculus 2 Sephs1 23 108 98 CCDS HistoryNCBI Gene:109079Re-query CCDS DB by CCDS ID:15659.1Re-query CCDS DB by GeneID:109079See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027973.13 ENSMUSP00000027973.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027973.13Link to Ensembl Protein Viewer:ENSMUSP00000027973.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027973Re-query CCDS DB by Protein ID:ENSMUSP00000027973
Original member Current member EBI ENSMUST00000115019.1 ENSMUSP00000110671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115019.1Link to Ensembl Protein Viewer:ENSMUSP00000110671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115019Re-query CCDS DB by Protein ID:ENSMUSP00000110671
Original member Current member NCBI NM_001362707.1 NP_001349636.1 Accepted alive Link to Nucleotide Sequence:NM_001362707.1Link to Protein Sequence:NP_001349636.1Re-query CCDS DB by Nucleotide ID:NM_001362707Re-query CCDS DB by Protein ID:NP_001349636Link to BLAST:NP_001349636.1
Original member Current member NCBI NM_001362708.1 NP_001349637.1 Accepted alive Link to Nucleotide Sequence:NM_001362708.1Link to Protein Sequence:NP_001349637.1Re-query CCDS DB by Nucleotide ID:NM_001362708Re-query CCDS DB by Protein ID:NP_001349637Link to BLAST:NP_001349637.1
Original member Current member NCBI NM_175400.6 NP_780609.4 Accepted alive Link to Nucleotide Sequence:NM_175400.6Link to Protein Sequence:NP_780609.4Re-query CCDS DB by Nucleotide ID:NM_175400Re-query CCDS DB by Protein ID:NP_780609Link to BLAST:NP_780609.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349636.1 392 Q8BH69 392 100% 0 0
NP_001349637.1 392 Q8BH69 392 100% 0 0
NP_780609.4 392 Q8BH69 392 100% 0 0

Chromosomal Locations for CCDS 15659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4884413 4884605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4889183 4889286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4891587 4891694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4893185 4893339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4896689 4896779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4899464 4899563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4905472 4905684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4906581 4906795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGTCTACTCGAGAGTCCTTTAACCCGGAGACTTATGAATTGGACAAGAGCTTCCGGCTAACCAGGTTTA
CTGAACTGAAAGGCACAGGCTGCAAAGTGCCCCAAGATGTCCTACAGAAACTGCTGGAATCTTTACAAGA
GAACCACTTCCAAGAAGATGAGCAGTTTCTGGGAGCTGTTATGCCACGACTTGGCATTGGGATGGATACT
TGCGTCATTCCTTTGAGGCATGGTGGTCTTTCCTTGGTTCAGACCACAGATTACATTTATCCTATCGTCG
ACGACCCGTATATGATGGGCAGGATAGCATGTGCCAATGTCCTCAGTGACCTTTATGCAATGGGTGTCAC
GGAGTGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACTGACCGGGAGAGGGATAAAGTG
ATACCGCTAATTATACAGGGTTTTAAAGATGCGGCAGAGGAAGCGGGAACCTCTGTAACAGGCGGCCAAA
CGGTATTAAACCCCTGGATTGTTCTGGGAGGAGTCGCCACAACGGTCTGCCAGCCCAATGAATTTATCAT
GCCAGATAATGCAGTACCTGGGGATGTGCTGGTATTGACAAAGCCCCTGGGGACACAGGTTGCAGTTGCT
GTGCACCAGTGGCTGGATATTCCCGAAAAATGGAATAAAATTAAGCTAGTGGTCACCCAAGAAGACGTAG
AGTTGGCATACCAAGAGGCAATGATGAACATGGCCCGGCTCAACAGGACAGCTGCAGGCCTCATGCACAC
GTTCAATGCTCATGCAGCCACTGACATCACCGGCTTCGGGATTCTGGGCCACGCGCAGAACCTGGCCAAG
CAACAGAGGAACGAAGTGTCCTTCGTGATTCACAACCTTCCTGTGCTGGCGAAGATGGCCGCTGTGAGCA
AAGCCTGCGGAAACATGTTCGGCCTAATGCATGGGACCTGCCCAGAGACGTCAGGAGGCCTGCTAATCTG
TCTACCCCGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATCAAGTCCCCCAAATACGGCGAAGGGCACCAA
GCATGGATTATTGGGATAGTGGAGAAGGGCAACCGCACAGCCAGGATCATCGACAAGCCTCGGATTATTG
AAGTCGCACCTCAAGTAGCCACACAAAACGTGAACCCCACACCTGGTGCCACCTCCTAA

Translation (392 aa):
MSTRESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDT
CVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKV
IPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVA
VHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAK
QQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQ
AWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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