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Report for CCDS15616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15616.1 Public Mus musculus 1 Atf3 23 108 98 CCDS HistoryNCBI Gene:11910Re-query CCDS DB by CCDS ID:15616.1Re-query CCDS DB by GeneID:11910See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027941.13 ENSMUSP00000027941.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027941.13Link to Ensembl Protein Viewer:ENSMUSP00000027941.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027941Re-query CCDS DB by Protein ID:ENSMUSP00000027941
Original member Current member EBI ENSMUST00000195117.1 ENSMUSP00000141492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195117.1Link to Ensembl Protein Viewer:ENSMUSP00000141492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195117Re-query CCDS DB by Protein ID:ENSMUSP00000141492
Original member Current member NCBI NM_007498.3 NP_031524.2 Accepted alive Link to Nucleotide Sequence:NM_007498.3Link to Protein Sequence:NP_031524.2Re-query CCDS DB by Nucleotide ID:NM_007498Re-query CCDS DB by Protein ID:NP_031524Link to BLAST:NP_031524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031524.2 181 Q60765 181 100% 0 0

Chromosomal Locations for CCDS 15616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191171482 191171679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191172375 191172482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191177231 191177470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGATGCTTCAACATCCAGGCCAGGTCTCTGCCTCAGAAGTCAGTGCGACCGCCATTGTCCCCTGCCTCT
CACCTCCTGGGTCACTGGTATTTGAGGATTTTGCTAACCTGACACCCTTTGTCAAGGAAGAGCTGAGATT
CGCCATCCAGAATAAACACCTCTGCCATCGGATGTCCTCTGCGCTGGAGTCAGTTACCGTCAACAACAGA
CCCCTGGAGATGTCAGTCACCAAGTCTGAGGCGGCCCCTGAAGAAGATGAGAGGAAAAGGAGGCGGCGAG
AAAGAAATAAAATTGCTGCTGCCAAGTGTCGAAACAAGAAAAAGGAGAAGACAGAGTGCCTGCAGAAAGA
GTCAGAGAAACTGGAGAGTGTGAATGCTGAGCTGAAGGCCCAGATTGAGGAGCTGAAGAATGAGAAACAG
CATTTGATATACATGCTCAACCTGCACCGGCCCACCTGCATCGTCCGGGCTCAGAATGGACGGACACCGG
AAGACGAGAGGAACCTCTTTATCCAACAGATAAAAGAAGGAACATTGCAGAGCTAA

Translation (181 aa):
MMLQHPGQVSASEVSATAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSSALESVTVNNR
PLEMSVTKSEAAPEEDERKRRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQ
HLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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