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Report for CCDS15587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15587.1 Public Mus musculus 1 Degs1 23 108 98 CCDS HistoryNCBI Gene:13244Re-query CCDS DB by CCDS ID:15587.1Re-query CCDS DB by GeneID:13244See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035295.5 ENSMUSP00000048519.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035295.5Link to Ensembl Protein Viewer:ENSMUSP00000048519.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035295Re-query CCDS DB by Protein ID:ENSMUSP00000048519
Original member Current member NCBI NM_007853.5 NP_031879.1 Accepted alive Link to Nucleotide Sequence:NM_007853.5Link to Protein Sequence:NP_031879.1Re-query CCDS DB by Nucleotide ID:NM_007853Re-query CCDS DB by Protein ID:NP_031879Link to BLAST:NP_031879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031879.1 323 O09005 323 100% 0 0

Chromosomal Locations for CCDS 15587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182276747 182276893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182278976 182279718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182282622 182282703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGTAGCCGCGTGTCCCGAGAGGAGTTCGAATGGGTCTACACGGACCAGCCCCACGCCGCCCGGCGCA
AGGAGATCTTAGCAAAGTATCCAGAGATCAAGTCCTTGATGAAACCTGACCACAATCTGATCTGGATTGT
AGCCATGATGCTTCTCGTCCAGCTGGCTTCATTTTACTTAGTCAAAGATTTGGACTGGAAATGGGTCATA
TTTTGGTCCTATGTCTTTGGCAGCTGCCTTAACCACTCCATGACTCTGGCTATCCATGAGATTTCCCACA
ATTTCCCCTTTGGCCACCACAAGGCCCTGTGGAACCGCTGGTTTGGAATGTTTGCTAACCTCTCTCTCGG
AGTGCCATACTCGATTTCCTTTAAGAGATACCACATGGATCACCACCGGTACCTCGGAGCGGATAAGATT
GATGTAGATATTCCCACCGATTTCGAGGGCTGGTTCTTCTGCACCACTTTCAGGAAATTTGTCTGGGTTA
TCCTTCAGCCTCTCTTTTATGCTTTTAGACCCCTGTTCATCAATCCCAAACCCATTACCTATCTGGAAAT
CATCAATACTGTGATCCAGATCACCTTTGACATTATCATTTATTATGTGTTTGGAGTGAAATCTTTAGTC
TACATGTTGGCAGCCACCTTGCTTGGCCTGGGTTTGCACCCAATTTCTGGGCATTTTATAGCCGAACATT
ACATGTTCTTGAAGGGACACGAAACCTACTCCTATTATGGGCCTCTGAACTTGCTCACCTTCAATGTGGG
CTATCATAACGAGCACCATGACTTCCCCAACGTTCCTGGGAAAAACCTGCCCATGGTGAGGAAGATCGCA
AGTGAGTACTACGATGACCTCCCGCACTACAACTCCTGGATCAAGGTGCTCTATGACTTTGTGACGGATG
ACACAATAAGTCCCTACTCGCGGATGAAGAGGCCTCCGAAAGGGAACGAGATTCTGGAGTAA

Translation (323 aa):
MGSRVSREEFEWVYTDQPHAARRKEILAKYPEIKSLMKPDHNLIWIVAMMLLVQLASFYLVKDLDWKWVI
FWSYVFGSCLNHSMTLAIHEISHNFPFGHHKALWNRWFGMFANLSLGVPYSISFKRYHMDHHRYLGADKI
DVDIPTDFEGWFFCTTFRKFVWVILQPLFYAFRPLFINPKPITYLEIINTVIQITFDIIIYYVFGVKSLV
YMLAATLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPMVRKIA
SEYYDDLPHYNSWIKVLYDFVTDDTISPYSRMKRPPKGNEILE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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