NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15557.1 Public Mus musculus 1 Efcab2 23 108 98 CCDS HistoryNCBI Gene:68226Re-query CCDS DB by CCDS ID:15557.1Re-query CCDS DB by GeneID:68226See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027775.8 ENSMUSP00000027775.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027775.8Link to Ensembl Protein Viewer:ENSMUSP00000027775.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027775Re-query CCDS DB by Protein ID:ENSMUSP00000027775
Original member Current member NCBI NM_026626.3 NP_080902.1 Accepted alive Link to Nucleotide Sequence:NM_026626.3Link to Protein Sequence:NP_080902.1Re-query CCDS DB by Nucleotide ID:NM_026626Re-query CCDS DB by Protein ID:NP_080902Link to BLAST:NP_080902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080902.1 164 Q9CQ46 164 100% 0 0

Chromosomal Locations for CCDS 15557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 178406103 178406133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178437402 178437486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178455816 178455888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178474882 178474961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178475685 178475727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178475825 178475891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178481313 178481428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGCGGAGGAAAGGGACGCGGAAGGGACAGAGGCACTAATTGCAGAACTTCATAAGAAGATCAAAGACG
CATTTGAAGTGTTCGACCATGAATCGAATAATACAGTAGATGTGAGAGAGATTGGGACAATTATCAGGTC
ATTAGGATGCTGCCCGACTGAAGGAGAGCTGCATGATTTCATTGCAGAGATAGAGGAAGAAGAACCCACT
GGCTACATTCGATTTGAAAAATTTATTCCAGTGATGACCAGAGCCCTTGTAGAAAGAAGATACAGACCAG
CTGCTGAAGATATCCTTTTGCGAGCTTTCGAGGTTTTGGATCCAGCTAAACGCGGGTTTCTCACTAAGGA
TGAACTTGTCAAGTACATGACTGAGGAAGGTGAGCCTTTTTCCCAAGAGGAAATGGAAGAAATGTTGTCT
GCTGCAATTGATCCCGAATCAAACACCATTAATTATAGGGACTACATAACAATGATGGTGGTAGATGAAA
ATTAA

Translation (164 aa):
MAEERDAEGTEALIAELHKKIKDAFEVFDHESNNTVDVREIGTIIRSLGCCPTEGELHDFIAEIEEEEPT
GYIRFEKFIPVMTRALVERRYRPAAEDILLRAFEVLDPAKRGFLTKDELVKYMTEEGEPFSQEEMEEMLS
AAIDPESNTINYRDYITMMVVDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH