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Report for CCDS15546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15546.1 Public Mus musculus 1 Rgs7 23 108 98 CCDS HistoryNCBI Gene:24012Re-query CCDS DB by CCDS ID:15546.1Re-query CCDS DB by GeneID:24012See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027812.10 ENSMUSP00000027812.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027812.10Link to Ensembl Protein Viewer:ENSMUSP00000027812.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027812Re-query CCDS DB by Protein ID:ENSMUSP00000027812
Original member Current member EBI ENSMUST00000192227.5 ENSMUSP00000142278.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192227.5Link to Ensembl Protein Viewer:ENSMUSP00000142278.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192227Re-query CCDS DB by Protein ID:ENSMUSP00000142278
Original member Current member NCBI NM_011880.3 NP_036010.2 Accepted alive Link to Nucleotide Sequence:NM_011880.3Link to Protein Sequence:NP_036010.2Re-query CCDS DB by Nucleotide ID:NM_011880Re-query CCDS DB by Protein ID:NP_036010Link to BLAST:NP_036010.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036010.2 469 O54829 469 100% 0 0

Chromosomal Locations for CCDS 15546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175059744 175059794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175078189 175078278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175079405 175079591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175083972 175084097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175086116 175086226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175089419 175089480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175090994 175091092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175093804 175093878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175121728 175121809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175121895 175121971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175122931 175122995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175149652 175149703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175153124 175153230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175189177 175189227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175270817 175270913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175491053 175491130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCTCAGGGAAATAATTATGGACAGACCAGCAACGGGGTGGCGGACGAATCACCCAACATGCTGGTGT
ACAGAAAGATGGAAGATGTCATAGCACGTATGCAAGACGAGAAAAACGGAATTCCCATCCGTACCGTCAA
AAGCTTCCTTTCCAAGATCCCCAGTGTGTTCTCCGGGTCAGACATTGTTCAATGGTTAATAAAGAACTTA
ACTATAGAAGATCCAGTGGAGGCTCTCCATTTGGGAACGCTAATGGCTGCCCATGGCTACTTCTTTCCCA
TCTCAGATCATGTCCTCACACTCAAGGATGACGGCACCTTCTACCGGTTTCAAACACCCTATTTTTGGCC
GTCAAATTGTTGGGAGCCAGAAAACACAGACTATGCTGTTTACCTCTGCAAGAGAACAATGCAAAACAAG
GCAAGGCTAGAGCTAGCAGATTATGAAGCCGAGAGCCTGGCCAGGCTGCAGAGAGCATTTGCCCGGAAGT
GGGAGTTCATTTTTATGCAAGCAGAAGCACAAGCTAAAGTGGACAAGAAGAGAGACAAAATTGAAAGGAA
GATCCTCGATAGTCAAGAGAGAGCATTCTGGGATGTCCACAGGCCTGTGCCTGGATGTGTAAATACTACA
GAAGTGGACATTAAGAAGTCATCCCGGATGAGAAACCCACACAAAACACGAAAGTCTGTCTATGGTTTAC
AAAATGACATCCGAAGTCACAGTCCCACCCACACACCTACACCAGAAACCAAGCCTCCTACAGAAGATGA
GCTGCACCAACAGATAAAATACTGGCAAATACAGTTAGATAGACATCGGTTAAAAATGTCAAAAGTTGCT
GATAGTCTACTAAGCTATACGGAACAGTATGTAGAATATGACCCGTTTCTTGTGCCGCCTGACCCTTCCA
ATCCATGGCTCTCAGATGATACGACTTTCTGGGAACTTGAAGCAAGCAAAGAACCAAGTCAACAGAGGGT
AAAACGATGGGGTTTTGGTATGGATGAGGCATTGAAAGACCCAGTTGGGCGAGAGCAGTTCCTTAAGTTT
CTAGAATCAGAATTCAGCTCAGAGAACTTAAGGTTCTGGTTGGCAGTGGAGGACCTGAAGAGAAGGCCTA
TCCGAGAGGTCCCCTCGAGAGTGCAGGAAATATGGCAAGAATTTCTGGCTCCTGGGGCCCCCAGTGCCAT
TAACTTGGATTCTAAGAGTTATGACAAGACCACACAGAATGTGAAGGAACCAGGACGATACACATTTGAA
GATGCTCAGGAGCATATTTACAAGCTGATGAAGAGCGACTCATACCCCCGCTTTATAAGATCTAGTGCCT
ACCAGGAACTTCTACAGGCAAAGAGAAAGGGAAAAACTCTCACATCCAAGAGGTTAACAAGCCTTGTTCA
GTCTTACTAG

Translation (469 aa):
MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNL
TIEDPVEALHLGTLMAAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNK
ARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTT
EVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPETKPPTEDELHQQIKYWQIQLDRHRLKMSKVA
DSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKF
LESEFSSENLRFWLAVEDLKRRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFE
DAQEHIYKLMKSDSYPRFIRSSAYQELLQAKRKGKTLTSKRLTSLVQSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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