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Report for CCDS15506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15506.1 Public Mus musculus 1 Nhlh1 23 108 98 CCDS HistoryNCBI Gene:18071Re-query CCDS DB by CCDS ID:15506.1Re-query CCDS DB by GeneID:18071See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059794.3 ENSMUSP00000057489.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059794.3Link to Ensembl Protein Viewer:ENSMUSP00000057489.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059794Re-query CCDS DB by Protein ID:ENSMUSP00000057489
Original member Current member NCBI NM_010916.2 NP_035046.1 Accepted alive Link to Nucleotide Sequence:NM_010916.2Link to Protein Sequence:NP_035046.1Re-query CCDS DB by Nucleotide ID:NM_010916Re-query CCDS DB by Protein ID:NP_035046Link to BLAST:NP_035046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035046.1 133 Q02576 133 100% 0 0

Chromosomal Locations for CCDS 15506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172053896 172054297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGATGCTCAACTCCGATACCATGGAGCTGGACCTGCCTCCCACCCACTCGGAGACCGAGTCGGGCTTTA
GCGACTGTGGGGGCGGACCGGGCCCCGATGGTGCTGGATCCGGGGATCCAGGAGTGGTCCAGGTCCGGAG
CTCAGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGTCGTGAGGAGCGCAGGCGCCGGCGC
CGCGCCACGGCCAAGTACCGCACGGCACACGCCACGCGGGAGCGCATCCGCGTGGAAGCCTTCAACCTAG
CCTTCGCCGAGCTGCGCAAGCTGCTGCCCACTCTGCCCCCGGACAAGAAGCTCTCTAAGATTGAGATCCT
ACGCCTGGCCATCTGCTATATCTCCTACCTGAACCATGTGCTGGACGTCTGA

Translation (133 aa):
MMLNSDTMELDLPPTHSETESGFSDCGGGPGPDGAGSGDPGVVQVRSSELGESGRKDLQHLSREERRRRR
RATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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