NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15495.1 Public Mus musculus 1 Usf1 23 108 98 CCDS HistoryNCBI Gene:22278Re-query CCDS DB by CCDS ID:15495.1Re-query CCDS DB by GeneID:22278See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161241.7 ENSMUSP00000125729.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161241.7Link to Ensembl Protein Viewer:ENSMUSP00000125729.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161241Re-query CCDS DB by Protein ID:ENSMUSP00000125729
Original member Current member EBI ENSMUST00000167546.1 ENSMUSP00000128913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167546.1Link to Ensembl Protein Viewer:ENSMUSP00000128913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167546Re-query CCDS DB by Protein ID:ENSMUSP00000128913
Original member NCBI NM_001305676.1 NP_001292605.1 Updated not alive Link to Nucleotide Sequence:NM_001305676.1Link to Protein Sequence:NP_001292605.1Re-query CCDS DB by Nucleotide ID:NM_001305676Re-query CCDS DB by Protein ID:NP_001292605
Current member NCBI NM_001305676.2 NP_001292605.1 Accepted alive Link to Nucleotide Sequence:NM_001305676.2Link to Protein Sequence:NP_001292605.1Re-query CCDS DB by Nucleotide ID:NM_001305676Re-query CCDS DB by Protein ID:NP_001292605Link to BLAST:NP_001292605.1
Original member NCBI NM_001305677.1 NP_001292606.1 Updated not alive Link to Nucleotide Sequence:NM_001305677.1Link to Protein Sequence:NP_001292606.1Re-query CCDS DB by Nucleotide ID:NM_001305677Re-query CCDS DB by Protein ID:NP_001292606
Current member NCBI NM_001305677.2 NP_001292606.1 Accepted alive Link to Nucleotide Sequence:NM_001305677.2Link to Protein Sequence:NP_001292606.1Re-query CCDS DB by Nucleotide ID:NM_001305677Re-query CCDS DB by Protein ID:NP_001292606Link to BLAST:NP_001292606.1
Original member NCBI NM_009480.3 NP_033506.1 Updated not alive Link to Nucleotide Sequence:NM_009480.3Link to Protein Sequence:NP_033506.1Re-query CCDS DB by Nucleotide ID:NM_009480Re-query CCDS DB by Protein ID:NP_033506
Current member NCBI NM_009480.4 NP_033506.1 Accepted alive Link to Nucleotide Sequence:NM_009480.4Link to Protein Sequence:NP_033506.1Re-query CCDS DB by Nucleotide ID:NM_009480Re-query CCDS DB by Protein ID:NP_033506Link to BLAST:NP_033506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292605.1 310 Q61069 310 100% 0 0
NP_001292606.1 310 Q61069 310 100% 0 0
NP_033506.1 310 Q61069 310 100% 0 0

Chromosomal Locations for CCDS 15495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171414522 171414529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171415505 171415554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171415715 171415830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171416135 171416236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171416810 171417005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171417242 171417329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171417473 171417531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171417641 171417864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171418032 171418121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAAGGGGCAGCAGAAAACAGCTGAAACCGAAGAGGGAACAGTGCAGATTCAGGAAGGCGCAGTGGCTA
CTGGAGAGGACCCAACTAGTGTAGCTATCGCCAGCATCCAGTCAGCTGCCACTTTTCCTGACCCCAACGT
CAAGTACGTCTTCCGAACTGAGAATGGGGGCCAGGTGATGTACAGGGTGATCCAGGTGTCAGAGGGGCAG
CTGGATGGCCAGACAGAGGGCTCTGGCGCCATCAGTGGTTACCCTGCCACTCAGTCTATGACCCAGGCAG
TGATCCAGGGAGCTTTCACCAGTGACGATGCCGTTGACACGGAGGGAGCAGCTGCTGAGACACATTATAC
ATATTTCCCCAGCACCGCAGTGGGAGATGGGTCAGGGGGTACCACATCTGGGAGTACTACAGCTGTTGTT
ACCACCCAGGGCTCAGAGGCACTACTGGGGCAGGCAACCCCGCCCAGCACAGGTCAATTCTTTGTGATGA
TGTCACCACAAGAAGTATTGCAGGGAGGGAGCCAGCGATCGATTGCCCCCAGGACCCACCCTTATTCCCC
GAAGTCAGAGGCTCCCAGGACAACTCGAGATGAGAAACGGAGGGCTCAACATAACGAAGTGGAGCGCCGC
CGCCGGGACAAGATCAACAACTGGATTGTACAGCTGTCCAAAATCATCCCAGACTGCTCTATGGAGAGCA
CCAAGTCTGGCCAGAGTAAAGGTGGAATCCTGTCCAAAGCCTGTGATTATATCCAGGAGCTGCGGCAGAG
CAACCACCGGCTGTCTGAAGAGCTGCAGGGGTTAGATCAGTTGCAGCTGGACAACGATGTGCTCCGGCAA
CAGGTGGAAGATCTCAAGAACAAGAACCTGCTCCTGCGAGCTCAGCTTCGGCACCACGGACTCGAGGTCG
TCATCAAGAATGACAGCAACTAA

Translation (310 aa):
MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVMYRVIQVSEGQ
LDGQTEGSGAISGYPATQSMTQAVIQGAFTSDDAVDTEGAAAETHYTYFPSTAVGDGSGGTTSGSTTAVV
TTQGSEALLGQATPPSTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVERR
RRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQ
QVEDLKNKNLLLRAQLRHHGLEVVIKNDSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH