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Report for CCDS15436.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15436.2 Public Mus musculus 1 Nme7 23 108 98 CCDS HistoryNCBI Gene:171567Re-query CCDS DB by CCDS ID:15436.2Re-query CCDS DB by GeneID:171567See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15436.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15436.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191947.5 ENSMUSP00000141431.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191947.5Link to Ensembl Protein Viewer:ENSMUSP00000141431.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191947Re-query CCDS DB by Protein ID:ENSMUSP00000141431
Original member Current member EBI ENSMUST00000193808.5 ENSMUSP00000141771.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193808.5Link to Ensembl Protein Viewer:ENSMUSP00000141771.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193808Re-query CCDS DB by Protein ID:ENSMUSP00000141771
Original member Current member EBI ENSMUST00000193683.5 ENSMUSP00000141963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193683.5Link to Ensembl Protein Viewer:ENSMUSP00000141963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193683Re-query CCDS DB by Protein ID:ENSMUSP00000141963
Original member Current member NCBI NM_001293313.1 NP_001280242.1 Accepted alive Link to Nucleotide Sequence:NM_001293313.1Link to Protein Sequence:NP_001280242.1Re-query CCDS DB by Nucleotide ID:NM_001293313Re-query CCDS DB by Protein ID:NP_001280242Link to BLAST:NP_001280242.1
Original member Current member NCBI NM_138314.4 NP_612187.2 Accepted alive Link to Nucleotide Sequence:NM_138314.4Link to Protein Sequence:NP_612187.2Re-query CCDS DB by Nucleotide ID:NM_138314Re-query CCDS DB by Protein ID:NP_612187Link to BLAST:NP_612187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280242.1 395 Q9QXL8 395 100% 0 0
NP_612187.2 395 Q9QXL8 395 100% 0 0

Chromosomal Locations for CCDS 15436.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164312879 164312938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164328293 164328400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164332612 164332778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164340729 164340839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164343214 164343264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164345219 164345426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164347774 164347879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164379359 164379423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164380641 164380709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164385700 164385801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164402970 164403077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164437016 164437048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGAGAGCCTGTCAGCAGGGAAGAAGTTCCAGTTTGGTTTCTCCATATATGGCACCCAAGAATCAGAGCG
AGAGATTCGCTTTCATTGCAGAGTGGTATGATCCAAATGCTTCATTGCTCCGACGCTATGAGCTGCTGTT
TTACCCCACAGACGGATCTGTTGAAATGCATGATGTAAAGAATCGTCGCACCTTCTTAAAGCGGACCAAG
TATGAGGACCTGCGCCTGGAAGATCTATTTATAGGCAACAAAGTCAATGTGTTTTCTCGACAGCTGGTGT
TGATTGACTATGGGGACCAATACACAGCCCGCCAGCTGGGCAGCAGGAAAGAGAAAACTTTAGCCCTGAT
CAAACCAGATGCAGTGTCAAAGGCCGGAGAAATCATTGAGATGATAAACAAAAGTGGATTTACTATAACC
AAACTCCGAATGATGACTCTGACAAGGAAAGAAGCAGCGGACTTTCATGTAGACCATCACTCAAGACCTT
TTTATAACGAACTGATCCAGTTTATCACAAGTGGGCCTGTTATTGCCATGGAGATCTTAAGAGATGACGC
GATCTGTGAGTGGAAAAGGTTGCTTGGACCCGCAAACTCTGGGCTATCACGGACAGATGCCCCCGGAAGC
ATCCGAGCCCTCTTTGGGACAGATGGCGTGAGAAATGCAGCTCACGGCCCTGATACTTTTGCATCTGCTG
CCAGAGAAATGGAATTGTTTTTTCCTTCAAGTGGAGGCTGTGGGCCAGCGAACACTGCTAAATTTACCAA
TTGCACCTGTTGCATCATTAAGCCTCATGCTATCAGTGAAGGAATGTTGGGAAAGATTTTAATAGCTATT
CGGGATGCATGCTTTGGAATGTCAGCGATACAGATGTTCAATTTGGATCGGGCTAATGTTGAAGAATTCT
ATGAAGTCTATAAAGGTGTAGTGTCTGAGTATAATGATATGGTGACAGAGCTGTGCTCCGGCCCTTGCGT
AGCAATAGAGATCCAACAGAGCAACCCTACAAAGACATTTCGAGAATTCTGCGGACCTGCTGATCCTGAA
ATCGCCCGGCATTTACGACCTGAGACCCTCAGGGCAATTTTTGGTAAAACTAAGGTTCAAAATGCTGTTC
ATTGCACGGATCTGCCGGAGGATGGGCTCCTGGAGGTCCAGTATTTCTTCAAGATCTTGGATAATTAG

Translation (395 aa):
MRACQQGRSSSLVSPYMAPKNQSERFAFIAEWYDPNASLLRRYELLFYPTDGSVEMHDVKNRRTFLKRTK
YEDLRLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAVSKAGEIIEMINKSGFTIT
KLRMMTLTRKEAADFHVDHHSRPFYNELIQFITSGPVIAMEILRDDAICEWKRLLGPANSGLSRTDAPGS
IRALFGTDGVRNAAHGPDTFASAAREMELFFPSSGGCGPANTAKFTNCTCCIIKPHAISEGMLGKILIAI
RDACFGMSAIQMFNLDRANVEEFYEVYKGVVSEYNDMVTELCSGPCVAIEIQQSNPTKTFREFCGPADPE
IARHLRPETLRAIFGKTKVQNAVHCTDLPEDGLLEVQYFFKILDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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