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Report for CCDS15434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15434.1 Public Mus musculus 1 Ccdc181 23 108 98 CCDS HistoryNCBI Gene:74895Re-query CCDS DB by CCDS ID:15434.1Re-query CCDS DB by GeneID:74895See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027867.6 ENSMUSP00000027867.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027867.6Link to Ensembl Protein Viewer:ENSMUSP00000027867.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027867Re-query CCDS DB by Protein ID:ENSMUSP00000027867
Original member Current member NCBI NM_029115.3 NP_083391.2 Accepted alive Link to Nucleotide Sequence:NM_029115.3Link to Protein Sequence:NP_083391.2Re-query CCDS DB by Nucleotide ID:NM_029115Re-query CCDS DB by Protein ID:NP_083391Link to BLAST:NP_083391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083391.2 509 Q80ZU5 509 100% 0 0

Chromosomal Locations for CCDS 15434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164278198 164278314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164279867 164280814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164282391 164282537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164286241 164286395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164287507 164287669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGATGAAGATAAAGATATTGATTCAAAAGAGAGTGGAGAATATGAAGATGACTTTGAAAAGGACTTGG
AGTGGTTGATCAATGATAAAGAAAAAAGTAATGGCAGCACAATAGAGATGGCTTGCAAGAAGGAAGATGA
TCTTGACCAGGTATTAAAAGAGAATGAAACAGAAACAGAACTTGGCCAACAGCTCTCTGATCCAGATAAC
TCTCCAAAGGATGAGGCCTTGCCCAGAAGGAATGATTTCATTTCTGTCCCAAGTATTCAGCCGTTGGATC
CCATATCAGACTCAGACAGTGAGAACTCCTTCCAGGATTCCAAACCAGAAAACCAGAAAGACCTGGAGGA
TGAAGAGGATGAGGAAGTAAGGAGATACATTATGGAGAAAATTATAGAGGCTAACAAGCTTCTTCAGACT
CAAGAGCCTGTGAATGATAAGAGGGAGCGAAAACTGAAGTTCAAAGACAAATTGGTTGATCTGGAAGTCC
CACCATTAGAAGACAGTGATACTTGTAAAGCTCTCTTAGAAAACGAGACCAATATGTCTGGGAAACTGTC
CCAGTTATGTATTTCTGGTGACTTAGAACAAGAGAGTGTTCTCGTGTCAGTTACCGATGGCAGCTGTGAA
GAAAACGATAGGAAGATACTGGTGGAGAGAGATGGAAAGTTTGAACTTATGAATCTGCAGGACATTGAGA
GTCAGGGCTTTCTGCCCCCCATTAGCAGCGCTAATAGTGTGGAACATGAATCCTCCCAGTTGCCGCTCAG
GGCTCCCAACCCGTCTGTTGGTGGGATCAAGAAAGAAGAGTCTGAAGCAAAGGGTCATGTCTTGCCTATC
TCTCCAGCAGGAGAGCCATTGGCTCAGGTCCCTCAGCTACTCCCCAACCCCAAGAATCGTCCAAGCTCTG
CTGCCAACCCAGATGTAACTAAAAAAGCCAGGAGGTCCAATCACAGGATACAGTCAGCAGGAGTCTCTCC
AGTGACCTCAACATACTGTCTTTCACCACGACAGAAGGAACTCCAAAAACAGCTGGAACGAAAGCGTGAA
AAGCTCAAGAGGGAGGAAGAACAGCGCAAACTGGAGGAAGAGAATGAGAAGAAAAAGGAGAATGAGATGG
TGTTTAAAGCATGGCTGCAGAAGAAAAGAGAGCAGGTCATAGAAATGCGGAGAGTTCAGCGGGCAAAGCA
GATCGAAGACATGAGCAGCAGACAAGTGAACAGAGACCCACAGCAAGCTTTTCGGTTATGGCTTAAGAAA
AAGCATGAGGAGCAGATGAAAGAAAGGAAGACAGAAGAACTCAGAAAGCAAGAGGAGTGTTTGTTCTTCC
TGAGGGGAACAGAGGGCCGCGAGAGAGCCTTTCGACAATGGCTCAGAAGGAAACAGATCGAGAAGATAGC
CGAGCAGCAGGCTGTCAAAGAGAGAGCCAGGCAGCTCCGGCTCGAAGCCCGCCGCTCCAAACAGCTACAG
AGCAGCCTGTACAGCATACCCGAAGCCAAGGCTTTCCGCTTCACCGACCACTACAACTGA

Translation (509 aa):
MDEDKDIDSKESGEYEDDFEKDLEWLINDKEKSNGSTIEMACKKEDDLDQVLKENETETELGQQLSDPDN
SPKDEALPRRNDFISVPSIQPLDPISDSDSENSFQDSKPENQKDLEDEEDEEVRRYIMEKIIEANKLLQT
QEPVNDKRERKLKFKDKLVDLEVPPLEDSDTCKALLENETNMSGKLSQLCISGDLEQESVLVSVTDGSCE
ENDRKILVERDGKFELMNLQDIESQGFLPPISSANSVEHESSQLPLRAPNPSVGGIKKEESEAKGHVLPI
SPAGEPLAQVPQLLPNPKNRPSSAANPDVTKKARRSNHRIQSAGVSPVTSTYCLSPRQKELQKQLERKRE
KLKREEEQRKLEEENEKKKENEMVFKAWLQKKREQVIEMRRVQRAKQIEDMSSRQVNRDPQQAFRLWLKK
KHEEQMKERKTEELRKQEECLFFLRGTEGRERAFRQWLRRKQIEKIAEQQAVKERARQLRLEARRSKQLQ
SSLYSIPEAKAFRFTDHYN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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