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Report for CCDS15336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15336.1 Public Mus musculus 1 Crb1 23 108 98 CCDS HistoryNCBI Gene:170788Re-query CCDS DB by CCDS ID:15336.1Re-query CCDS DB by GeneID:170788See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059825.11 ENSMUSP00000060769.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059825.11Link to Ensembl Protein Viewer:ENSMUSP00000060769.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059825Re-query CCDS DB by Protein ID:ENSMUSP00000060769
Original member Current member NCBI NM_133239.2 NP_573502.2 Accepted alive Link to Nucleotide Sequence:NM_133239.2Link to Protein Sequence:NP_573502.2Re-query CCDS DB by Nucleotide ID:NM_133239Re-query CCDS DB by Protein ID:NP_573502Link to BLAST:NP_573502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573502.2 1405 Q8VHS2-1 1405 100% 0 0

Chromosomal Locations for CCDS 15336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 139198572 139198787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139231664 139231790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139234727 139234855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139236822 139237728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139241123 139241288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139242978 139243525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139248119 139249075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139314571 139314753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139323227 139323366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139328151 139328346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139337030 139337608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139376841 139376910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4218 nt):
ATGAAGCTCAAGAGAACTGCCTACCTTCTCTTCCTGTACCTCAGCTCCTCACTGCTCATCTGCATAAAGA
ATTCATTTTGCAATAAAAACAATACCAGGTGCCTTTCAGGTCCTTGCCAAAACAATTCTACGTGCAAGCA
TTTTCCACAAGACAACAATTGTTGCTTAGACACAGCCAATAATTTGGACAAAGACTGTGAAGATCTGAAA
GACCCTTGCTTCTCGAGTCCCTGCCAAGGAATTGCCACTTGTGTGAAAATCCCAGGGGAAGGGAACTTCC
TGTGTCAGTGTCCTCCTGGGTACAGCGGGCTGAACTGTGAAACTGCCACCAATTCCTGTGGAGGGAACCT
CTGCCAACATGGAGGCACCTGCCGTAAAGACCCTGAGCACCCTGTCTGTATCTGCCCTCCTGGATATGCT
GGAAGGTTCTGTGAGACTGATCACAATGAGTGTGCTTCTAGCCCTTGCCACAATGGGGCTATGTGCCAGG
ATGGAATCAATGGCTACTCCTGCTTCTGTGTGCCTGGATACCAAGGCAGGCATTGTGACTTGGAAGTGGA
TGAATGTGTTTCTGATCCCTGCAAGAATGAGGCTGTGTGCCTCAATGAGATAGGAAGATACACTTGTGTC
TGCCCTCAAGAGTTTTCTGGCGTGAACTGTGAGTTGGAAATTGATGAATGCAGATCCCAGCCTTGTCTCC
ACGGTGCCACATGTCAGGACGCTCCAGGGGGCTACTCCTGTGACTGTGCACCTGGATTCCTTGGAGAGCA
CTGTGAACTCAGCGTTAATGAATGTGAAAGTCAGCCGTGTCTCCATGGAGGTCTATGTGTGGATGGAAGA
AACAGTTACCACTGTGACTGCACAGGTAGTGGATTCACAGGGATGCACTGTGAGTCCTTGATTCCTCTTT
GTTGGTCAAAGCCTTGTCACAACGACGCGACATGTGAAGATACTGTTGACAGCTATATTTGTCACTGCCG
GCCTGGATACACAGGTGCCCTGTGTGAGACAGACATAAATGAATGCAGTAGCAACCCCTGCCAATTTTGG
GGGGAATGTGTCGAGCTGTCCTCAGAGGGTCTATATGGAAACACTGCTGGCCTGCCTTCCTCCTTCAGCT
ATGTTGGAGCCTCGGGCTATGTGTGTATCTGTCAGCCTGGATTCACAGGAATTCACTGTGAAGAAGACGT
TGATGAATGTTTACTGCACCCTTGCCTAAATGGTGGTACTTGTGAGAACCTGCCTGGGAATTATGCCTGT
CACTGTCCCTTTGATGACACTTCTAGGACATTTTATGGAGGAGAAAACTGCTCAGAAATTCTCCTGGGCT
GCACTCATCACCAGTGTCTGAACAATGGAAAATGTATCCCTCATTTCCAAAATGGCCAGCATGGATTCAC
TTGCCAGTGTCTTTCTGGCTATGCGGGGCCCCTGTGTGAAACTGTCACCACACTTTCATTTGGGAGCAAT
GGCTTCCTATGGGTCACAAGTGGCTCCCATACAGGCATAGGGCCAGAATGTAACATATCCTTGAGGTTTC
ACACTGTTCAACCAAACGCACTTCTCCTCATCCGAGGCAACAAGGACGTGTCTATGAAGCTGGAGTTGCT
GAATGGTTGTGTTCACTTATCAATTGAAGTCTGGAATCAGTTAAAGGTGCTCCTGTCTATTTCTCACAAC
ACCAGTGATGGAGAATGGCATTTCGTGGAGGTAACAATCGCAGAAACTCTAACCCTTGCCCTAGTTGGCG
GCTCCTGCAAGGAGAAGTGCACCACCAAGTCTTCTGTTCCAGTTGAGAATCATCAATCAATATGTGCTTT
GCAGGACTCTTTTTTGGGTGGCTTACCAATGGGGACAGCCAACAACAGTGTGTCTGTGCTTAACATCTAT
AATGTGCCGTCCACACCTTCCTTTGTAGGCTGTCTCCAAGACATTAGATTTGATTTGAATCACATTACTC
TGGAGAACGTTTCATCTGGCCTGTCATCAAATGTTAAAGCAGGCTGCCTGGGAAAGGACTGGTGTGAAAG
TCAACCCTGTCAAAACAGAGGACGCTGCATCAACTTGTGGCAGGGTTATCAGTGTGAATGTGACAGGCCC
TATACAGGCTCCAACTGCCTGAAAGAGTATGTAGCGGGAAGATTTGGCCAAGATGACTCCACAGGATATG
CGGCCTTTAGTGTTAATGATAATTATGGACAGAACTTCAGTCTTTCAATGTTTGTCCGAACACGTCAACC
CCTGGGCTTACTTCTGGCTTTGGAAAATAGTACTTACCAGTATGTCAGTGTCTGGCTAGAGCACGGCAGC
CTAGCACTGCAGACTCCAGGCTCTCCCAAGTTCATGGTAAACTTTTTTCTCAGTGATGGAAATGTTCACT
TAATATCTTTGAGAATCAAACCAAATGAAATTGAACTGTATCAGTCTTCACAAAACCTAGGATTCATTTC
TGTTCCTACATGGACAATTCGAAGAGGAGACGTCATCTTCATTGGTGGCTTACCTGACAGAGAGAAGACT
GAAGTTTATGGTGGCTTCTTCAAAGGCTGTGTTCAAGATGTCAGATTAAACAGCCAGACTCTGGAATTCT
TTCCCAATTCAACAAACAATGCATACGATGACCCAATTCTTGTCAATGTGACTCAAGGCTGTCCCGGAGA
CAACACATGTAAGTCCAACCCCTGTCATAATGGAGGTGTCTGCCACTCCCTGTGGGATGACTTCTCCTGC
TCCTGCCCTACAAACACAGCGGGGAGAGCCTGCGAGCAAGTTCAGTGGTGTCAACTCAGCCCATGTCCTC
CCACTGCAGAGTGCCAGCTGCTCCCTCAAGGGTTTGAATGTATCGCAAACGCTGTTTTCAGCGGATTAAG
CAGAGAAATACTCTTCAGAAGCAATGGGAACATTACCAGAGAACTCACCAATATCACATTTGCTTTCAGA
ACACATGATACAAATGTGATGATATTGCATGCAGAAAAAGAACCAGAGTTTCTTAATATTAGCATTCAAG
ATGCCAGATTATTCTTTCAATTGCGAAGTGGCAACAGCTTTTATACGCTGCACCTGATGGGTTCCCAATT
GGTGAATGATGGCACATGGCACCAAGTGACTTTCTCCATGATAGACCCAGTGGCCCAGACCTCCCGGTGG
CAAATGGAGGTGAACGACCAGACACCCTTTGTGATAAGTGAAGTTGCTACTGGAAGCCTGAACTTTTTGA
AGGACAATACAGACATCTATGTGGGTGACCAATCTGTTGACAATCCGAAAGGCCTGCAGGGCTGTCTGAG
CACAATAGAGATTGGAGGCATATATCTTTCTTACTTTGAAAATCTACATGGTTTCCCTGGTAAGCCTCAG
GAAGAGCAATTTCTCAAAGTTTCTACAAATATGGTACTTACTGGCTGTTTGCCATCAAATGCCTGCCACT
CCAGCCCCTGTTTGCATGGAGGAAACTGTGAAGACAGCTACAGTTCTTATCGGTGTGCCTGTCTCTCGGG
ATGGTCAGGGACACACTGTGAAATCAACATTGATGAGTGCTTTTCTAGCCCCTGTATCCATGGCAACTGC
TCTGATGGAGTTGCAGCCTACCACTGCAGGTGTGAGCCTGGATACACCGGTGTGAACTGTGAGGTGGATG
TAGACAATTGCAAGAGTCATCAGTGTGCAAATGGGGCCACCTGTGTTCCTGAAGCTCATGGCTACTCTTG
TCTCTGCTTTGGAAATTTTACCGGGAGATTTTGCAGACACAGCAGATTACCCTCAACAGTCTGTGGGAAT
GAGAAGAGAAACTTCACTTGCTACAATGGAGGCAGCTGCTCCATGTTCCAGGAGGACTGGCAATGTATGT
GCTGGCCAGGTTTCACTGGAGAGTGGTGTGAAGAGGACATCAACGAGTGTGCCTCCGATCCCTGCATCAA
TGGAGGACTGTGCAGGGACTTGGTCAACAGGTTCCTATGCATCTGTGATGTGGCCTTCGCTGGCGAGCGC
TGTGAGCTGGACCTGGCTGATGACAGGCTCCTGGGCATTTTCACCGCTGTTGGCTCCGGAACTTTGGCCC
TGTTCTTCATCCTCTTGCTTGCTGGGGTTGCTTCTCTTATTGCCTCCAACAAAAGGGCGACTCAAGGAAC
CTACAGCCCCAGCGGTCAGGAGAAGGCTGGCCCTCGAGTGGAAATGTGGATCAGGATGCCGCCCCCGGCA
CTGGAAAGGCTCATCTAG

Translation (1405 aa):
MKLKRTAYLLFLYLSSSLLICIKNSFCNKNNTRCLSGPCQNNSTCKHFPQDNNCCLDTANNLDKDCEDLK
DPCFSSPCQGIATCVKIPGEGNFLCQCPPGYSGLNCETATNSCGGNLCQHGGTCRKDPEHPVCICPPGYA
GRFCETDHNECASSPCHNGAMCQDGINGYSCFCVPGYQGRHCDLEVDECVSDPCKNEAVCLNEIGRYTCV
CPQEFSGVNCELEIDECRSQPCLHGATCQDAPGGYSCDCAPGFLGEHCELSVNECESQPCLHGGLCVDGR
NSYHCDCTGSGFTGMHCESLIPLCWSKPCHNDATCEDTVDSYICHCRPGYTGALCETDINECSSNPCQFW
GECVELSSEGLYGNTAGLPSSFSYVGASGYVCICQPGFTGIHCEEDVDECLLHPCLNGGTCENLPGNYAC
HCPFDDTSRTFYGGENCSEILLGCTHHQCLNNGKCIPHFQNGQHGFTCQCLSGYAGPLCETVTTLSFGSN
GFLWVTSGSHTGIGPECNISLRFHTVQPNALLLIRGNKDVSMKLELLNGCVHLSIEVWNQLKVLLSISHN
TSDGEWHFVEVTIAETLTLALVGGSCKEKCTTKSSVPVENHQSICALQDSFLGGLPMGTANNSVSVLNIY
NVPSTPSFVGCLQDIRFDLNHITLENVSSGLSSNVKAGCLGKDWCESQPCQNRGRCINLWQGYQCECDRP
YTGSNCLKEYVAGRFGQDDSTGYAAFSVNDNYGQNFSLSMFVRTRQPLGLLLALENSTYQYVSVWLEHGS
LALQTPGSPKFMVNFFLSDGNVHLISLRIKPNEIELYQSSQNLGFISVPTWTIRRGDVIFIGGLPDREKT
EVYGGFFKGCVQDVRLNSQTLEFFPNSTNNAYDDPILVNVTQGCPGDNTCKSNPCHNGGVCHSLWDDFSC
SCPTNTAGRACEQVQWCQLSPCPPTAECQLLPQGFECIANAVFSGLSREILFRSNGNITRELTNITFAFR
THDTNVMILHAEKEPEFLNISIQDARLFFQLRSGNSFYTLHLMGSQLVNDGTWHQVTFSMIDPVAQTSRW
QMEVNDQTPFVISEVATGSLNFLKDNTDIYVGDQSVDNPKGLQGCLSTIEIGGIYLSYFENLHGFPGKPQ
EEQFLKVSTNMVLTGCLPSNACHSSPCLHGGNCEDSYSSYRCACLSGWSGTHCEINIDECFSSPCIHGNC
SDGVAAYHCRCEPGYTGVNCEVDVDNCKSHQCANGATCVPEAHGYSCLCFGNFTGRFCRHSRLPSTVCGN
EKRNFTCYNGGSCSMFQEDWQCMCWPGFTGEWCEEDINECASDPCINGGLCRDLVNRFLCICDVAFAGER
CELDLADDRLLGIFTAVGSGTLALFFILLLAGVASLIASNKRATQGTYSPSGQEKAGPRVEMWIRMPPPA
LERLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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