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Report for CCDS15295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15295.1 Public Mus musculus 1 Ren1 23 108 98 CCDS HistoryNCBI Gene:19701Re-query CCDS DB by CCDS ID:15295.1Re-query CCDS DB by GeneID:19701See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094556.2 ENSMUSP00000092135.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094556.2Link to Ensembl Protein Viewer:ENSMUSP00000092135.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094556Re-query CCDS DB by Protein ID:ENSMUSP00000092135
Original member Current member NCBI NM_031192.3 NP_112469.1 Accepted alive Link to Nucleotide Sequence:NM_031192.3Link to Protein Sequence:NP_112469.1Re-query CCDS DB by Nucleotide ID:NM_031192Re-query CCDS DB by Protein ID:NP_112469Link to BLAST:NP_112469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112469.1 402 P06281 402 100% 0 0

Chromosomal Locations for CCDS 15295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133350706 133350797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133354127 133354277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133354802 133354925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133355495 133355613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133356385 133356581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133358404 133358523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133358938 133359082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133359334 133359432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133359977 133360138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGACAGAAGGAGGATGCCTCTCTGGGCACTCTTGTTGCTCTGGAGTCCTTGCACCTTCAGTCTCCCAA
CACGCACCGCTACCTTTGAACGAATCCCGCTCAAGAAAATGCCTTCTGTCCGGGAAATCCTGGAGGAGCG
GGGAGTGGACATGACCAGGCTCAGTGCTGAATGGGGCGTATTCACAAAGAGGCCTTCCTTGACCAATCTT
ACCTCCCCCGTGGTCCTCACCAACTACCTGAATACCCAGTACTACGGCGAGATTGGCATCGGTACCCCAC
CCCAGACCTTCAAAGTCATCTTTGACACGGGTTCAGCCAACCTCTGGGTGCCCTCCACCAAGTGCAGCCG
CCTCTACCTTGCTTGTGGGATTCACAGCCTCTATGAGTCCTCTGACTCCTCCAGCTACATGGAGAACGGG
TCCGACTTCACCATCCACTACGGATCAGGGAGAGTCAAAGGTTTCCTCAGCCAGGACTCGGTGACTGTGG
GTGGAATCACTGTGACACAGACCTTTGGAGAGGTCACCGAGCTGCCCCTGATCCCTTTCATGCTGGCCAA
GTTTGACGGTGTTCTAGGCATGGGCTTTCCCGCTCAGGCCGTTGGCGGGGTTACCCCTGTCTTTGACCAC
ATTCTCTCCCAGGGGGTGCTAAAGGAGGAAGTGTTCTCTGTCTACTACAACAGGGGTTCCCACCTGCTGG
GGGGCGAGGTGGTGCTAGGAGGTAGCGACCCGCAGCATTATCAAGGCAATTTTCACTATGTGAGCATCAG
CAAGACTGACTCCTGGCAGATCACGATGAAGGGGGTGTCTGTGGGGTCTTCCACCCTGCTATGTGAAGAA
GGCTGTGCGGTAGTGGTGGACACTGGTTCATCCTTTATCTCGGCTCCTACGAGCTCCCTGAAGTTGATCA
TGCAAGCCCTGGGAGCCAAGGAGAAGAGAATAGAAGAATATGTTGTGAACTGTAGCCAGGTGCCCACCCT
CCCCGACATTTCCTTTGACCTGGGAGGCAGGGCCTACACACTCAGCAGTACGGACTACGTGCTACAGTAT
CCCAACAGGAGAGACAAGCTGTGCACACTGGCTCTCCATGCCATGGACATCCCACCACCCACTGGGCCTG
TCTGGGTCCTGGGTGCCACCTTCATCCGCAAGTTCTATACAGAGTTTGATCGGCATAACAATCGCATTGG
ATTCGCCTTGGCCCGCTAA

Translation (402 aa):
MDRRRMPLWALLLLWSPCTFSLPTRTATFERIPLKKMPSVREILEERGVDMTRLSAEWGVFTKRPSLTNL
TSPVVLTNYLNTQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENG
SDFTIHYGSGRVKGFLSQDSVTVGGITVTQTFGEVTELPLIPFMLAKFDGVLGMGFPAQAVGGVTPVFDH
ILSQGVLKEEVFSVYYNRGSHLLGGEVVLGGSDPQHYQGNFHYVSISKTDSWQITMKGVSVGSSTLLCEE
GCAVVVDTGSSFISAPTSSLKLIMQALGAKEKRIEEYVVNCSQVPTLPDISFDLGGRAYTLSSTDYVLQY
PNRRDKLCTLALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALAR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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