NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15207.1 Public Mus musculus 1 Tnfrsf11a 23 108 98 CCDS HistoryNCBI Gene:21934Re-query CCDS DB by CCDS ID:15207.1Re-query CCDS DB by GeneID:21934See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027559.7 ENSMUSP00000027559.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027559.7Link to Ensembl Protein Viewer:ENSMUSP00000027559.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027559Re-query CCDS DB by Protein ID:ENSMUSP00000027559
Original member NCBI NM_009399.3 NP_033425.3 Updated not alive Link to Nucleotide Sequence:NM_009399.3Link to Protein Sequence:NP_033425.3Re-query CCDS DB by Nucleotide ID:NM_009399Re-query CCDS DB by Protein ID:NP_033425
NCBI NM_009399.4 NP_033425.3 Updated not alive Link to Nucleotide Sequence:NM_009399.4Link to Protein Sequence:NP_033425.3Re-query CCDS DB by Nucleotide ID:NM_009399Re-query CCDS DB by Protein ID:NP_033425
Current member NCBI NM_009399.5 NP_033425.3 Accepted alive Link to Nucleotide Sequence:NM_009399.5Link to Protein Sequence:NP_033425.3Re-query CCDS DB by Nucleotide ID:NM_009399Re-query CCDS DB by Protein ID:NP_033425Link to BLAST:NP_033425.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033425.3 625 O35305 625 100% 0 0

Chromosomal Locations for CCDS 15207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 105780752 105780829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105808143 105808224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105809330 105809455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105813651 105813794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105817669 105817762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105819870 105819964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105821478 105821591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105825000 105825052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105826991 105827735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105844520 105844866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGCCCCGCGCGCCCGGCGGCGCCGCCAGCTGCCCGCGCCGCTGCTGGCGCTCTGCGTGCTGCTCGTTC
CACTGCAGGTGACTCTCCAGGTCACTCCTCCATGCACCCAGGAGAGGCATTATGAGCATCTCGGACGGTG
TTGCAGCAGATGCGAACCAGGAAAGTACCTGTCCTCTAAGTGCACTCCTACCTCCGACAGTGTGTGTCTG
CCCTGTGGCCCCGATGAGTACTTGGACACCTGGAATGAAGAAGATAAATGCTTGCTGCATAAAGTCTGTG
ATGCAGGCAAGGCCCTGGTGGCGGTGGATCCTGGCAACCACACGGCCCCGCGTCGCTGTGCTTGCACGGC
TGGCTACCACTGGAACTCAGACTGCGAGTGCTGCCGCAGGAACACGGAGTGTGCACCTGGCTTCGGAGCT
CAGCATCCCTTGCAGCTCAACAAGGATACGGTGTGCACACCCTGCCTCCTGGGCTTCTTCTCAGATGTCT
TTTCGTCCACAGACAAATGCAAACCTTGGACCAACTGCACCCTCCTTGGAAAGCTAGAAGCACACCAGGG
GACAACGGAATCAGATGTGGTCTGCAGCTCTTCCATGACACTGAGGAGACCACCCAAGGAGGCCCAGGCT
TACCTGCCCAGTCTCATCGTTCTGCTCCTCTTCATCTCTGTGGTAGTAGTGGCTGCCATCATCTTCGGCG
TTTACTACAGGAAGGGAGGGAAAGCGCTGACAGCTAATTTGTGGAATTGGGTCAATGATGCTTGCAGTAG
TCTAAGTGGAAATAAGGAGTCCTCAGGGGACCGTTGTGCTGGTTCCCACTCGGCAACCTCCAGTCAGCAA
GAAGTGTGTGAAGGTATCTTACTAATGACTCGGGAGGAGAAGATGGTTCCAGAAGACGGTGCTGGAGTCT
GTGGGCCTGTGTGTGCGGCAGGTGGGCCCTGGGCAGAAGTCAGAGATTCTAGGACGTTCACACTGGTCAG
CGAGGTTGAGACGCAAGGAGACCTCTCGAGGAAGATTCCCACAGAGGATGAGTACACGGACCGGCCCTCG
CAGCCTTCGACTGGTTCACTGCTCCTAATCCAGCAGGGAAGCAAATCTATACCCCCATTCCAGGAGCCCC
TGGAAGTGGGGGAGAACGACAGTTTAAGCCAGTGTTTCACCGGGACTGAAAGCACGGTGGATTCTGAGGG
CTGTGACTTCACTGAGCCTCCGAGCAGAACTGACTCTATGCCCGTGTCCCCTGAAAAGCACCTGACAAAA
GAAATAGAAGGTGACAGTTGCCTCCCCTGGGTGGTCAGCTCCAACTCAACAGATGGCTACACAGGCAGTG
GGAACACTCCTGGGGAGGACCATGAACCCTTTCCAGGGTCCCTGAAATGTGGACCATTGCCCCAGTGTGC
CTACAGCATGGGCTTTCCCAGTGAAGCAGCAGCCAGCATGGCAGAGGCGGGAGTACGGCCCCAGGACAGG
GCTGATGAGAGGGGAGCCTCAGGGTCCGGGAGCTCCCCCAGTGACCAGCCACCTGCCTCTGGGAACGTGA
CTGGAAACAGTAACTCCACGTTCATCTCTAGCGGGCAGGTGATGAACTTCAAGGGTGACATCATCGTGGT
GTATGTCAGCCAGACCTCGCAGGAGGGCCCGGGTTCCGCAGAGCCCGAGTCGGAGCCCGTGGGCCGCCCT
GTGCAGGAGGAGACGCTGGCACACAGAGACTCCTTTGCGGGCACCGCGCCGCGCTTCCCCGACGTCTGTG
CCACCGGGGCTGGGCTGCAGGAGCAGGGGGCACCCCGGCAGAAGGACGGGACATCGCGGCCGGTGCAGGA
GCAGGGTGGGGCGCAGACTTCACTCCATACCCAGGGGTCCGGACAATGTGCAGAATGA

Translation (625 aa):
MAPRARRRRQLPAPLLALCVLLVPLQVTLQVTPPCTQERHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCL
PCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGA
QHPLQLNKDTVCTPCLLGFFSDVFSSTDKCKPWTNCTLLGKLEAHQGTTESDVVCSSSMTLRRPPKEAQA
YLPSLIVLLLFISVVVVAAIIFGVYYRKGGKALTANLWNWVNDACSSLSGNKESSGDRCAGSHSATSSQQ
EVCEGILLMTREEKMVPEDGAGVCGPVCAAGGPWAEVRDSRTFTLVSEVETQGDLSRKIPTEDEYTDRPS
QPSTGSLLLIQQGSKSIPPFQEPLEVGENDSLSQCFTGTESTVDSEGCDFTEPPSRTDSMPVSPEKHLTK
EIEGDSCLPWVVSSNSTDGYTGSGNTPGEDHEPFPGSLKCGPLPQCAYSMGFPSEAAASMAEAGVRPQDR
ADERGASGSGSSPSDQPPASGNVTGNSNSTFISSGQVMNFKGDIIVVYVSQTSQEGPGSAEPESEPVGRP
VQEETLAHRDSFAGTAPRFPDVCATGAGLQEQGAPRQKDGTSRPVQEQGGAQTSLHTQGSGQCAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH