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Report for CCDS15051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15051.1 Public Mus musculus 1 Bcs1l 23 108 98 CCDS HistoryNCBI Gene:66821Re-query CCDS DB by CCDS ID:15051.1Re-query CCDS DB by GeneID:66821See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027358.10 ENSMUSP00000027358.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027358.10Link to Ensembl Protein Viewer:ENSMUSP00000027358.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027358Re-query CCDS DB by Protein ID:ENSMUSP00000027358
Original member Current member EBI ENSMUST00000113732.1 ENSMUSP00000109361.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113732.1Link to Ensembl Protein Viewer:ENSMUSP00000109361.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113732Re-query CCDS DB by Protein ID:ENSMUSP00000109361
Original member Current member EBI ENSMUST00000113733.9 ENSMUSP00000109362.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113733.9Link to Ensembl Protein Viewer:ENSMUSP00000109362.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113733Re-query CCDS DB by Protein ID:ENSMUSP00000109362
Original member Current member NCBI NM_001305652.1 NP_001292581.1 Accepted alive Link to Nucleotide Sequence:NM_001305652.1Link to Protein Sequence:NP_001292581.1Re-query CCDS DB by Nucleotide ID:NM_001305652Re-query CCDS DB by Protein ID:NP_001292581Link to BLAST:NP_001292581.1
Original member Current member NCBI NM_025784.5 NP_080060.1 Accepted alive Link to Nucleotide Sequence:NM_025784.5Link to Protein Sequence:NP_080060.1Re-query CCDS DB by Nucleotide ID:NM_025784Re-query CCDS DB by Protein ID:NP_080060Link to BLAST:NP_080060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292581.1 418 Q9CZP5 418 100% 0 0
NP_080060.1 418 Q9CZP5 418 100% 0 0

Chromosomal Locations for CCDS 15051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74589559 74589878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74589960 74590099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74590265 74590459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74590671 74590734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74590960 74591129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74591589 74591706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74591822 74592071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCCATTTTCAGACTTTGTTCTGGCCCTTAAAGACAATCCCTACTTTGGGGCTGGATTTGGGCTGGTAG
GTGTGGGTACGGCTCTGGCTATGGCCCGGAAAGGAGCCCAGTTGGGTCTAGTGGCATTCCGGCGCCATTA
CATGATCACACTGGAAGTCCCTGCCAGAGACAGAAGCTATGCCTGGTTGCTTAGCTGGCTTACCCGACAC
AGCACCCGCACTCAGCACCTCAGTGTTGAAACCTCATACCTTCAGCATGAAAGTGGCCGGATCTCCACCA
AGTTTGAATTTATCCCCAGCCCTGGAAACCACTTCATTTGGTATCAGGGAAAATGGATCCGGGTAGAACG
AAACCGAGACATGCAGATGGTAGACTTGCAAACAGGGACTCCTTGGGAATCTGTCACCTTCACGGCCCTG
GGCACTGACCGAAAGGTTTTCTTCAACATCCTGGAAGAAGCTCGAGCACTGGCCCTGCAGCAGGAGGAAG
GGAAGACTGTGATGTACACAGCTGTGGGGTCTGAATGGCGTACCTTTGGTTATCCGCGCCGACGTCGGCC
ACTGGATTCTGTAGTCCTACAGCAGGGTCTGGCTGACCGAATTGTCAAAGATATCCGGGAATTTATTGAT
AACCCCAAGTGGTACATTGACAGAGGCATTCCCTACAGACGTGGCTACCTTCTTTATGGGCCCCCTGGTT
GTGGAAAGAGCAGTTTTATAACAGCCCTGGCTGGAGAACTGGAACACAGCATCTGCCTGCTCAGCCTCAC
AGACTCTAGCCTCTCAGATGACCGGCTCAACCATCTACTGAGTGTAGCACCACAGCAGAGCTTGGTGCTC
CTGGAAGATGTGGATGCTGCTTTTCTCAGTAGAGACTTGGCTGTGGAGAACCCTATAAAGTACCAAGGAC
TAGGCCGCCTCACCTTCAGTGGACTGCTTAATGCTTTGGATGGTGTAGCCTCCACTGAAGCACGAATTGT
GTTCATGACCACCAACTACATTGACAGGCTGGATCCTGCCCTCATACGTCCCGGGCGAGTAGATCTGAAG
GAGTATGTGGGCTACTGCTCACACTGGCAGCTGACCCAGATGTTCCAGAGGTTCTATCCAGGGCAAGCAC
CTTCTTTGGCTGAGAACTTTGCTGAACATGTCCTTAAAGCTACATCTGAGATTAGTCCTGCCCAGGTGCA
AGGCTACTTCATGCTGTATAAAAATGACCCCATGGGGGCTGTTCACAACATTGAATCTCTGAGGTGA

Translation (418 aa):
MPFSDFVLALKDNPYFGAGFGLVGVGTALAMARKGAQLGLVAFRRHYMITLEVPARDRSYAWLLSWLTRH
STRTQHLSVETSYLQHESGRISTKFEFIPSPGNHFIWYQGKWIRVERNRDMQMVDLQTGTPWESVTFTAL
GTDRKVFFNILEEARALALQQEEGKTVMYTAVGSEWRTFGYPRRRRPLDSVVLQQGLADRIVKDIREFID
NPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVL
LEDVDAAFLSRDLAVENPIKYQGLGRLTFSGLLNALDGVASTEARIVFMTTNYIDRLDPALIRPGRVDLK
EYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLKATSEISPAQVQGYFMLYKNDPMGAVHNIESLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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