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Report for CCDS14981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14981.1 Public Mus musculus 1 Stradb 23 108 98 CCDS HistoryNCBI Gene:227154Re-query CCDS DB by CCDS ID:14981.1Re-query CCDS DB by GeneID:227154See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027185.10 ENSMUSP00000027185.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027185.10Link to Ensembl Protein Viewer:ENSMUSP00000027185.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027185Re-query CCDS DB by Protein ID:ENSMUSP00000027185
Original member Current member NCBI NM_172656.6 NP_766244.4 Accepted alive Link to Nucleotide Sequence:NM_172656.6Link to Protein Sequence:NP_766244.4Re-query CCDS DB by Nucleotide ID:NM_172656Re-query CCDS DB by Protein ID:NP_766244Link to BLAST:NP_766244.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766244.4 418 Q8K4T3-1 418 100% 0 0

Chromosomal Locations for CCDS 14981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58977054 58977065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58979934 58980014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58985289 58985388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58988506 58988627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58989690 58989798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58991013 58991136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58992204 58992375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58992651 58992755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58992893 58993137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58993561 58993603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58994293 58994436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGTCTCTTTTGGATTGTTTCTGTGCTTCACGAACACGAGTCGAATCACTCAGACCCGAAAAACAGTCTG
AAACCAGTATCCATCAGTACTTGGTTGATGAGTCAGCCATTTCCCGGCCCCCTCCGTCTGCTAGAGCCAG
TGAGGTGATCTGCTCCACTGACGTGTCTCACTATGAACTGCAAGTGGAGATAGGAAGAGGGTTTGACAAC
TTGACCTCTGTTCATCTTGCACGGCACACTCCTACAGGAACACTGGTAACTGTAAAGATTACAAACCTGG
AAAGCTGCACTGAAGAACGTCTGAAAGCTTTACAGAGAGCAGTGATTCTATCTCACTTTTTCCAACATCC
CAATATTACAACTTATTGGACAGTGTTCACTGTTGGCAGCTGGCTTTGGGTTATTTCTCCATTTATGGCC
TACGGTTCAGCAAGTCAGCTCCTAAGGACCTACTTTCCTGATGGAATGAGTGAGACTTTAATAAGAAACA
TTCTCTTTGGAGCAGTACAAGGGTTGAACTATCTGCACCAAAATGGCTGTATCCATAGGAGTTTTAAAGC
CAGCCATATCCTCATTTCTGGTGATGGCCTGGTGACCCTCTCTGGCCTGTCCCACCTGCATAGTTTGCTT
AAGCACGGACAAAGGCATAGGGCTGTGTTTGATTTCCCACAGTTCAGCACATCAGTGCAGCCGTGGCTGA
GTCCAGAACTACTGAGACAGGATTTACATGGATATAATGTGAAGTCAGATATTTACAGTGTTGGGATCAC
AGCCTGTGAATTGGCCAGCGGGCAGGTACCTTTCCAGGACATGCATAGGACTCAGATGCTATTACAGAAA
CTGAAAGGTCCTCCGTATAGCCCACTGGATGTCAGTATTTTTCCTCAGTCAGACTCTAGAATGAGAAATT
CCCAGTCAGGAGTAGACTCTGGGATTGGAGAGAGTGTGCTTGTCTCCACTGGAACTCACACAGTCAATAG
TGACCGGCTCCATACGCCATCCACAAAGACGTTCTCTCCTGCCTTTTTTAGCTTGGTGCAGCTGTGTTTG
CAGCAAGATCCTGAGAAAAGGCCATCAGCAAGCAGTTTGTTGTCCCATGTATTCTTCAAGCAGATGAAAG
AAGAAAGCCAGGATTCCATACTTCCCCTGTTGCCACCTGCTTATAACAGGCCATCAGCGTCACTGCAGCC
AGTGTCGCCGTGGAGCGAGCTGGAATTCCAGTTTCCTGATGACAAAGACCCAGTGTGGGAATTCTAG

Translation (418 aa):
MSLLDCFCASRTRVESLRPEKQSETSIHQYLVDESAISRPPPSARASEVICSTDVSHYELQVEIGRGFDN
LTSVHLARHTPTGTLVTVKITNLESCTEERLKALQRAVILSHFFQHPNITTYWTVFTVGSWLWVISPFMA
YGSASQLLRTYFPDGMSETLIRNILFGAVQGLNYLHQNGCIHRSFKASHILISGDGLVTLSGLSHLHSLL
KHGQRHRAVFDFPQFSTSVQPWLSPELLRQDLHGYNVKSDIYSVGITACELASGQVPFQDMHRTQMLLQK
LKGPPYSPLDVSIFPQSDSRMRNSQSGVDSGIGESVLVSTGTHTVNSDRLHTPSTKTFSPAFFSLVQLCL
QQDPEKRPSASSLLSHVFFKQMKEESQDSILPLLPPAYNRPSASLQPVSPWSELEFQFPDDKDPVWEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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