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Report for CCDS14976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14976.1 Public Mus musculus 1 Hycc2 23 108 98 CCDS HistoryNCBI Gene:213056Re-query CCDS DB by CCDS ID:14976.1Re-query CCDS DB by GeneID:213056See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038372.13 ENSMUSP00000038718.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038372.13Link to Ensembl Protein Viewer:ENSMUSP00000038718.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038372Re-query CCDS DB by Protein ID:ENSMUSP00000038718
Original member Current member EBI ENSMUST00000161600.7 ENSMUSP00000123728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161600.7Link to Ensembl Protein Viewer:ENSMUSP00000123728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161600Re-query CCDS DB by Protein ID:ENSMUSP00000123728
Original member Current member NCBI NM_001310599.1 NP_001297528.1 Accepted alive Link to Nucleotide Sequence:NM_001310599.1Link to Protein Sequence:NP_001297528.1Re-query CCDS DB by Nucleotide ID:NM_001310599Re-query CCDS DB by Protein ID:NP_001297528Link to BLAST:NP_001297528.1
Original member Current member NCBI NM_172513.3 NP_766101.3 Accepted alive Link to Nucleotide Sequence:NM_172513.3Link to Protein Sequence:NP_766101.3Re-query CCDS DB by Nucleotide ID:NM_172513Re-query CCDS DB by Protein ID:NP_766101Link to BLAST:NP_766101.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297528.1 530 Q8C729-1 530 100% 0 0
NP_766101.3 530 Q8C729-1 530 100% 0 0

Chromosomal Locations for CCDS 14976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58529658 58530259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58535390 58535549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58539559 58539646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58540134 58540250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58544667 58544762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58546107 58546222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58548639 58548719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58552150 58552329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58557272 58557373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58557977 58558027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCTGGGATCGGAACGAGCTGTTGTGGAAGAATGGTTATCAGAATTCAAGGCATTACCTGACACTCAGA
TTACCAGTTATGCAGCAACCTTGCACCGGAAAAAAGCCCTTGTACCAGCTCTCTATAAAGTTATTCAGGA
TTCAAACAATGAGCTCCTGGAGCCTGTCTGCCACCAACTGTTTGAGCTCTATCGTAGCTCTGAAGTTCGA
CTTAAGAGGTTCACACTGCAGTTCCTGCCCGAATTGATTTGGGTTTATTTGCGACTTACAGTTAGTAGAG
ACAGGCAGAGCAATGGCTGCATTGAAGCACTTCTCCTAGGAATTTATAATTTGGAAATTGCTGATAAAGA
TGGAAACAATAAAGTGCTGTCTTTCACTATCCCTTCCTTGTCTAAGCCTTCAATATACCATGAACCCTCA
ACAATTGGATCCATGGCTTTGACAGAAGGGGCATTATGTCAGCATGATCTCATCAGGGTTGTTTACAGTG
ATCTTCATCCTCAGAGAGAAACATTCACTGCACAGAACCGGTTTGAAGTCCTAAGTTTTCTCATGCTGTG
CTATAATTCAGCGATTGTGTATATGCCTGCATCATCTTACCAATCTCTTTGTCGGATGGGTTCCAGGGTT
TGCGTGAGTGGGTTTCCACGACAACATGAGAAACAGTGGAAGGAGCTCTGTGGTCGAATTGTATTAGATC
CTGAATTTATGGTGCAACTTCTCACAGGAGTTTACTATGCCATGTATAATGGACAGTGGGACCTTGGCCA
GGAAGTACTTGATGACATCATTTACAGAGCTCAGCTAGAACTCTTTTCTCAGCCACTCTTGGTGGCAAAT
GCCATGAAAAATTCATTACCATTTGATGCACCTGACTCTTCACAAGAAGGCCAGAAAGTACTTAAAGTGG
AAGTCACTCCAACAGTGCCGAGAATTTCTCGGACTGCAATTACAACAGCTTCAATTCGTCGTCATAGATG
GAGAAGAGAAGGTGCTGAGGGTCTAAATGGCGGAGAGGAGTCCTTAAACATGAATGATGCAGATGAAGGA
TTTTCATCAGGGGCTTCTCTTAGCAGCCAACCACATGGGACCAAACCACCCTCCTCTTCTCAGCGGGGAA
GCTTGCGGAAAGTAGCAACTGGGCGTTCCGCCAAAGACAAAGAAACAGCATTAGCCATCAAATCCAATGA
GAGCCCTCGAGATTCAGTAGTTGGAAAGCAGTTTGTACAACAACAAGCAGATCTCAGCATAGATTCAGTT
GAGCTGACACCGATGAAGAAACACTTGAGCCTGCCTGCAGGCCAGGTGGTGCCAAAAACCAATAGTCTGA
GTCTAATCCGGACAGCCAGTGCTTCCTCAAGTAAATCTTTTGACTATGTAAATGGCGGTCAAGCAAGTAC
CAGCATTGGGGTTGGCACTGAGGGAGTTACTAATCTAGCAGCTACAAATGCTAATCGATATTCAACTATC
AGTCTACAAGAAGACCGGCTAGGTCACGCTGGTGAAGGTAAAGAGCTCCTCAGCCCAGGAGCCCCCTTAA
CCAAGCAGTCTCGATCCCCAAGTTTCAATATGCAGCTAATATCCCAGGTGTAG

Translation (530 aa):
MLGSERAVVEEWLSEFKALPDTQITSYAATLHRKKALVPALYKVIQDSNNELLEPVCHQLFELYRSSEVR
LKRFTLQFLPELIWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPS
TIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRV
CVSGFPRQHEKQWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVAN
AMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGLNGGEESLNMNDADEG
FSSGASLSSQPHGTKPPSSSQRGSLRKVATGRSAKDKETALAIKSNESPRDSVVGKQFVQQQADLSIDSV
ELTPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGGQASTSIGVGTEGVTNLAATNANRYSTI
SLQEDRLGHAGEGKELLSPGAPLTKQSRSPSFNMQLISQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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