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Report for CCDS14909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14909.1 Public Mus musculus 1 Il1r2 23 108 98 CCDS HistoryNCBI Gene:16178Re-query CCDS DB by CCDS ID:14909.1Re-query CCDS DB by GeneID:16178See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14909.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027243.12 ENSMUSP00000027243.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027243.12Link to Ensembl Protein Viewer:ENSMUSP00000027243.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027243Re-query CCDS DB by Protein ID:ENSMUSP00000027243
Original member Current member NCBI NM_010555.5 NP_034685.1 Accepted alive Link to Nucleotide Sequence:NM_010555.5Link to Protein Sequence:NP_034685.1Re-query CCDS DB by Nucleotide ID:NM_010555Re-query CCDS DB by Protein ID:NP_034685Link to BLAST:NP_034685.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034685.1 410 P27931 410 100% 0 0

Chromosomal Locations for CCDS 14909.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40102429 40102537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40105264 40105522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40111955 40112135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40115024 40115198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40117955 40118017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40120909 40121044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40123122 40123264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40125041 40125207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGTTCATCTTGCTTGTGTTAGTAACTGGAGTTTCTGCTTTCACCACTCCAACAGTGGTGCACACAGGAA
AGGTTTCTGAATCCCCCATTACATCGGAGAAGCCCACAGTCCATGGAGACAACTGTCAGTTTCGTGGCAG
AGAGTTCAAATCTGAATTGAGGCTGGAAGGTGAACCTGTGGTTCTGAGGTGCCCCTTGGCACCTCACTCC
GACATCTCCAGCAGTTCCCATAGTTTTCTGACCTGGAGTAAATTGGACTCTTCTCAGCTGATCCCAAGAG
ATGAGCCAAGGATGTGGGTGAAGGGTAACATACTCTGGATTCTGCCAGCAGTGCAGCAAGACTCTGGTAC
CTACATTTGCACATTCAGAAACGCATCCCACTGTGAGCAAATGTCTGTGGAACTCAAGGTCTTTAAGAAT
ACTGAAGCATCTCTGCCTCATGTCTCCTACTTGCAAATCTCAGCTCTCTCCACCACCGGGTTACTAGTGT
GCCCTGACCTGAAAGAATTCATCTCCAGCAACGCTGATGGAAAGATACAGTGGTATAAGGGCGCCATACT
CTTGGATAAAGGCAATAAGGAATTTCTGAGTGCAGGAGACCCCACACGCCTATTGATATCCAACACGTCC
ATGGACGATGCAGGCTATTACAGATGTGTTATGACATTTACCTACAATGGCCAGGAATACAACATCACTA
GGAATATTGAACTCCGGGTCAAAGGAACAACCACGGAACCCATCCCTGTGATCATTTCTCCCCTGGAGAC
AATACCAGCATCATTGGGGTCAAGACTGATAGTCCCGTGCAAAGTGTTTCTGGGAACTGGTACATCTTCC
AACACCATTGTGTGGTGGTTGGCTAACAGCACGTTTATCTCGGCTGCTTACCCAAGAGGCCGTGTGACCG
AGGGGCTACACCACCAGTACTCAGAGAATGATGAAAACTATGTGGAAGTGTCGCTGATTTTTGATCCAGT
CACAAGGGAGGATCTGCATACAGATTTTAAATGTGTTGCCTCGAATCCACGGAGTTCTCAGTCACTCCAT
ACCACAGTCAAAGAAGTCTCTTCCACGTTCTCCTGGAGCATTGCGCTGGCACCTCTGTCTCTGATCATCT
TGGTTGTGGGGGCAATATGGATGCGCAGACGGTGTAAACGCAGGGCTGGAAAGACATATGGACTGACCAA
GCTACGGACTGACAACCAGGACTTCCCTTCCAGCCCAAACTAA

Translation (410 aa):
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPVVLRCPLAPHS
DISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGNILWILPAVQQDSGTYICTFRNASHCEQMSVELKVFKN
TEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQWYKGAILLDKGNKEFLSAGDPTRLLISNTS
MDDAGYYRCVMTFTYNGQEYNITRNIELRVKGTTTEPIPVIISPLETIPASLGSRLIVPCKVFLGTGTSS
NTIVWWLANSTFISAAYPRGRVTEGLHHQYSENDENYVEVSLIFDPVTREDLHTDFKCVASNPRSSQSLH
TTVKEVSSTFSWSIALAPLSLIILVVGAIWMRRRCKRRAGKTYGLTKLRTDNQDFPSSPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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