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Report for CCDS13952.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13952.2 Public Homo sapiens 22 SH3BP1 24 110 108 CCDS HistoryNCBI Gene:23616Re-query CCDS DB by CCDS ID:13952.2Re-query CCDS DB by GeneID:23616See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13952.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000649765.2 ENSP00000497104.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649765.2Link to Ensembl Protein Viewer:ENSP00000497104.1Re-query CCDS DB by Nucleotide ID:ENST00000649765Re-query CCDS DB by Protein ID:ENSP00000497104
Original member Current member NCBI NM_018957.6 NP_061830.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018957.6Link to Protein Sequence:NP_061830.3Re-query CCDS DB by Nucleotide ID:NM_018957Re-query CCDS DB by Protein ID:NP_061830Link to BLAST:NP_061830.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061830.3 701 Q9Y3L3-1 701 100% 0 0

Chromosomal Locations for CCDS 13952.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37639788 37639846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37641126 37641168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37641374 37641478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37642539 37642615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37642895 37643006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37643098 37643174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37643644 37643788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37644637 37644705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37644870 37644960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37645365 37645510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37646818 37646929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37647267 37647348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37647441 37647521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37648319 37648435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37650152 37650249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37650542 37650725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37653779 37653873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37655272 37655684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGATGAAGAGGCAGCTGCACCGCATGCGGCAGCTGGCCCAGACGGGCAGCTTGGGACGCACCCCGGAGA
CCGCTGAGTTCCTGGGTGAGGACCTGCTGCAGGTAGAACAGCGGCTGGAGCCGGCCAAGCGGGCAGCCCA
CAACATCCACAAGCGGCTGCAGGCCTGTCTGCAGGGCCAGAGCGGGGCAGACATGGACAAGCGGGTGAAG
AAGCTTCCCCTCATGGCTCTGTCCACCACGATGGCTGAGAGCTTCAAGGAGCTGGACCCTGATTCCAGCA
TGGGGAAGGCCTTGGAGATGAGCTGTGCCATCCAGAATCAGCTGGCCCGCATCCTGGCCGAGTTTGAGAT
GACCCTGGAGAGGGACGTCCTGCAGCCACTCAGCAGGCTGAGTGAGGAGGAGCTGCCAGCCATCCTCAAA
CACAAGAAAAGCCTCCAGAAGCTCGTGTCCGACTGGAACACACTCAAGAGCAGGCTCAGTCAGGCAACCA
AGAATTCAGGCAGCAGTCAAGGCCTAGGAGGCAGCCCGGGTAGTCACAGCCATACGACCATGGCCAACAA
GGTGGAGACGCTGAAGGAGGAGGAGGAGGAGCTGAAGAGGAAAGTGGAGCAATGCAGGGACGAGTACTTG
GCTGACCTGTACCACTTTGTTACCAAGGAGGACTCCTATGCCAACTACTTCATTCGTCTCCTGGAGATTC
AGGCCGATTACCATCGCAGGTCACTGAGCTCGCTGGACACAGCCCTGGCTGAGCTGAGGGAGAACCACGG
CCAAGCAGACCACTCCCCTTCGATGACAGCCACCCACTTCCCCAGGGTGTATGGGGTGTCGCTGGCAACC
CACCTGCAAGAGCTGGGCCGGGAGATTGCCCTGCCCATCGAGGCCTGCGTCATGATGCTGCTTTCTGAGG
GCATGAAGGAAGAGGGTCTCTTCCGTCTGGCTGCTGGGGCCTCGGTGCTGAAGCGTCTCAAGCAGACAAT
GGCCTCGGACCCCCACAGCCTGGAGGAGTTCTGCTCCGACCCGCACGCTGTGGCAGGTGCCCTCAAGTCC
TATCTGCGGGAGCTGCCAGAGCCTCTGATGACCTTCGACCTCTATGATGACTGGATGAGGGCAGCCAGCC
TGAAGGAGCCAGGGGCCCGGCTGCAGGCCCTCCAAGAGGTGTGCAGCCGCCTACCCCCCGAGAACCTCAG
CAACCTCAGGTACCTGATGAAGTTCCTGGCACGGCTGGCCGAGGAGCAGGAGGTGAACAAGATGACACCC
AGCAACATCGCCATAGTCCTGGGACCCAACTTGCTGTGGCCACCTGAGAAAGAAGGGGACCAGGCCCAGC
TGGATGCAGCCTCCGTGTCTTCCATCCAGGTGGTGGGCGTCGTCGAGGCGCTGATCCAGAGCGCAGACAC
CCTCTTCCCTGGAGACATCAACTTCAACGTGTCAGGCCTCTTCTCAGCTGTTACCCTCCAGGACACAGTC
AGTGACAGGCTGGCCTCTGAGGAACTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGCTCCGG
CTCCGGCTCCAGCTCCAGCTCCGGCCCCAGCCTTGGCTTCAGCAGCTACCAAGGAAAGGACAGAGTCTGA
GGTGCCTCCCAGACCAGCCTCCCCCAAGGTCACCAGGAGTCCCCCGGAGACAGCTGCCCCAGTGGAGGAC
ATGGCTCGGAGGACCAAGCGCCCGGCGCCAGCCCGGCCCACCATGCCGCCCCCCCAGGTCTCCGGCTCCC
GCTCCTCCCCTCCAGCCCCGCCCTTGCCCCCTGGCTCTGGCAGCCCTGGGACCCCCCAAGCCCTGCCCCG
ACGTCTGGTTGGCAGCAGCCTCCGAGCCCCCACAGTGCCACCCCCGTTACCCCCCACACCCCCTCAGCCT
GCCCGGCGCCAAAGCCGGCGTTCACCAGCCTCCCCCAGCCCGGCCTCCCCAGGTCCAGCCTCCCCCAGCC
CAGTCTCTTTGAGTAACCCTGCACAGGTGGACCTGGGGGCTGCCACAGCAGAGGGAGGAGCCCCTGAGGC
TATCAGTGGGGTCCCCACTCCCCCAGCTATCCCCCCTCAGCCCCGCCCCAGGAGCCTTGCCTCAGAGACC
AACTGA

Translation (701 aa):
MMKRQLHRMRQLAQTGSLGRTPETAEFLGEDLLQVEQRLEPAKRAAHNIHKRLQACLQGQSGADMDKRVK
KLPLMALSTTMAESFKELDPDSSMGKALEMSCAIQNQLARILAEFEMTLERDVLQPLSRLSEEELPAILK
HKKSLQKLVSDWNTLKSRLSQATKNSGSSQGLGGSPGSHSHTTMANKVETLKEEEEELKRKVEQCRDEYL
ADLYHFVTKEDSYANYFIRLLEIQADYHRRSLSSLDTALAELRENHGQADHSPSMTATHFPRVYGVSLAT
HLQELGREIALPIEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQTMASDPHSLEEFCSDPHAVAGALKS
YLRELPEPLMTFDLYDDWMRAASLKEPGARLQALQEVCSRLPPENLSNLRYLMKFLARLAEEQEVNKMTP
SNIAIVLGPNLLWPPEKEGDQAQLDAASVSSIQVVGVVEALIQSADTLFPGDINFNVSGLFSAVTLQDTV
SDRLASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPETAAPVED
MARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQP
ARRQSRRSPASPSPASPGPASPSPVSLSNPAQVDLGAATAEGGAPEAISGVPTPPAIPPQPRPRSLASET
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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