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Report for CCDS12712.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12712.2 Public Homo sapiens 19 CARD8 24 110 108 CCDS HistoryNCBI Gene:22900Re-query CCDS DB by CCDS ID:12712.2Re-query CCDS DB by GeneID:22900See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12712.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12712.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447740.6 ENSP00000391248.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447740.6Link to Ensembl Protein Viewer:ENSP00000391248.2Re-query CCDS DB by Nucleotide ID:ENST00000447740Re-query CCDS DB by Protein ID:ENSP00000391248
Original member Current member EBI ENST00000521613.5 ENSP00000427858.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521613.5Link to Ensembl Protein Viewer:ENSP00000427858.1Re-query CCDS DB by Nucleotide ID:ENST00000521613Re-query CCDS DB by Protein ID:ENSP00000427858
Original member Current member EBI ENST00000520153.5 ENSP00000428736.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520153.5Link to Ensembl Protein Viewer:ENSP00000428736.1Re-query CCDS DB by Nucleotide ID:ENST00000520153Re-query CCDS DB by Protein ID:ENSP00000428736
Original member Current member NCBI NM_001184901.1 NP_001171830.1 Accepted alive Link to Nucleotide Sequence:NM_001184901.1Link to Protein Sequence:NP_001171830.1Re-query CCDS DB by Nucleotide ID:NM_001184901Re-query CCDS DB by Protein ID:NP_001171830Link to BLAST:NP_001171830.1
Original member Current member NCBI NM_001351783.2 NP_001338712.1 Accepted alive Link to Nucleotide Sequence:NM_001351783.2Link to Protein Sequence:NP_001338712.1Re-query CCDS DB by Nucleotide ID:NM_001351783Re-query CCDS DB by Protein ID:NP_001338712Link to BLAST:NP_001338712.1
Original member Current member NCBI NM_014959.5 NP_055774.2 Accepted alive Link to Nucleotide Sequence:NM_014959.5Link to Protein Sequence:NP_055774.2Re-query CCDS DB by Nucleotide ID:NM_014959Re-query CCDS DB by Protein ID:NP_055774Link to BLAST:NP_055774.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171830.1 487 Q9Y2G2-4 487 100% 0 0
NP_001338712.1 487 Q9Y2G2-4 487 100% 0 0
NP_055774.2 487 Q9Y2G2-4 487 100% 0 0

Chromosomal Locations for CCDS 12712.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48211710 48211975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48215340 48215384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48218871 48219012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48221730 48221855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48230438 48230700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48230777 48231006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48231660 48231810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48232453 48232493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48234403 48234543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48240962 48241020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACGGGTATACAGGG
AGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGAGACAGAGGC
AGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGTGTATCAGAA
GAGCAGGAATCTTCAGAGGGACAAGATTCAGGAGACATTTGCTCAGAAGAGAATCAAATAGTTTCCTCTT
ATGCTTCTAAAGTCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGTTTCTGGGGCCTGAAGGAAA
TGTGGATGTTGAGTTGATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCCACTGCTGGCTGGTAT
CTGTGGTCAGCCACAGGCCTCGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGCGTTTGGTTCCT
GGAGTCAGCACCTGGCCCTGGACCTGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGTTTGATGT
CACTGCAGAGCCAGAGGAGGCTGTCGCCGAAATCCACCTCCCCCACTTCATCTCCCTCCAAGCAGGTGAG
GTGGACGTCTCCTGGTTTCTCGTTGCCCATTTTAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGG
TGGAGCCTTTCTATGCTGTCCTGGAAAGCCCCAGCTTCTCTCTGATGGGCATCCTGCTGCGGATCGCCAG
TGGGACTCGCCTCTCCATCCCCATCACTTCCAACACATTGATCTATTATCACCCCCACCCCGAAGATATT
AAGTTCCACTTGTACCTTGTCCCCAGCGACGCCTTGCTAACAAAGGCGATAGATGATGAGGAAGATCGCT
TCCATGGTGTGCGCCTGCAGACTTCGCCCCCAATGGAACCCCTGAACTTTGGTTCCAGTTATATTGTGTC
TAATTCTGCTAACCTGAAAGTAATGCCCAAGGAGTTGAAATTGTCCTACAGGAGCCCTGGAGAAATTCAG
CACTTCTCAAAATTCTATGCTGGGCAGATGAAGGAACCCATTCAACTTGAGATTACTGAAAAAAGACATG
GGACTTTGGTGTGGGATACTGAGGTGAAGCCAGTGGATCTCCAGCTTGTAGCTGCATCAGCCCCTCCTCC
TTTCTCAGGTGCAGCCTTTGTGAAGGAGAACCACCGGCAACTCCAAGCCAGGATGGGGGACCTGAAAGGG
GTGCTCGATGATCTCCAAGACAATGAGGTTCTTACTGAGAATGAGAAGGAGCTGGTGGAGCAGGAAAAGA
CACGGCAGAGCAAGAATGAGGCCTTGCTGAGCATGGTGGAGAAGAAAGGGGACCTGGCCCTGGACGTGCT
CTTCAGAAGCATTAGTGAAAGGGACCCTTACCTCGTGTCCTATCTTAGACAGCAGAATTTGTAA

Translation (487 aa):
MEKKECPEKSSSSEEELPRRVYRELPCVSETLCDISHFFQEDDETEAEPLLFRAVPECQLSGGDIPSVSE
EQESSEGQDSGDICSEENQIVSSYASKVCFEIEEDYKNRQFLGPEGNVDVELIDKSTNRYSVWFPTAGWY
LWSATGLGFLVRDEVTVTIAFGSWSQHLALDLQHHEQWLVGGPLFDVTAEPEEAVAEIHLPHFISLQAGE
VDVSWFLVAHFKNEGMVLEHPARVEPFYAVLESPSFSLMGILLRIASGTRLSIPITSNTLIYYHPHPEDI
KFHLYLVPSDALLTKAIDDEEDRFHGVRLQTSPPMEPLNFGSSYIVSNSANLKVMPKELKLSYRSPGEIQ
HFSKFYAGQMKEPIQLEITEKRHGTLVWDTEVKPVDLQLVAASAPPPFSGAAFVKENHRQLQARMGDLKG
VLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALDVLFRSISERDPYLVSYLRQQNL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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