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Report for CCDS11620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11620.1 Public Homo sapiens 17 TUBD1 24 110 108 CCDS HistoryNCBI Gene:51174Re-query CCDS DB by CCDS ID:11620.1Re-query CCDS DB by GeneID:51174See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325752.8 ENSP00000320797.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325752.8Link to Ensembl Protein Viewer:ENSP00000320797.3Re-query CCDS DB by Nucleotide ID:ENST00000325752Re-query CCDS DB by Protein ID:ENSP00000320797
Original member Current member EBI ENST00000592426.5 ENSP00000468518.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592426.5Link to Ensembl Protein Viewer:ENSP00000468518.1Re-query CCDS DB by Nucleotide ID:ENST00000592426Re-query CCDS DB by Protein ID:ENSP00000468518
Original member Current member NCBI NM_016261.4 NP_057345.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016261.4Link to Protein Sequence:NP_057345.2Re-query CCDS DB by Nucleotide ID:NM_016261Re-query CCDS DB by Protein ID:NP_057345Link to BLAST:NP_057345.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057345.2 453 Q9UJT1-1 453 100% 0 0

Chromosomal Locations for CCDS 11620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59860322 59860424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59863664 59863847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59866609 59866749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59874539 59874703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59878103 59878334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59880894 59881110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59886083 59886230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59890831 59891002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGC
TTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAA
AGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCC
AAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCATGCT
TCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGTTACTCTGTTCATGGACCCAGGCATGAAGA
ATCTATAATGAACATAATCCGGAAGGAAGTGGAGAAATGTGACTCTTTCAGTGGTTTTTTCATCATAATG
AGTATGGCTGGGGGCACAGGATCAGGATTAGGAGCTTTCGTTACACAGAATTTAGAAGATCAGTACTCAA
ACTCATTGAAAATGAATCAGATTATTTGGCCTTATGGAACTGGTGAGGTTATTGTTCAAAACTACAACTC
CATTTTGACACTTTCTCACTTGTACCGATCTTCAGACGCCCTCCTTCTTCATGAGAATGATGCCATCCAT
AAGATCTGTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATC
AGCTGGGAAGTGTGTTCCAGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAGG
AGACTTAATGGAGCATTTAGTTCCCCATCCTGAATTCAAGATGCTGAGTGTTCGTAACATTCCTCACATG
TCTGAGAATTCATTGGCATACACCACATTTACTTGGGCTGGCCTCCTCAAGCATTTGAGACAGATGCTCA
TTTCTAATGCAAAGATGGAAGAAGGTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCCTCCTCT
TAGTAAAATGTCTCTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGG
AAAGATGTGCAAAGTGCAGATGTGGAGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTG
TTAATGCTTTCAACGTGTGGAAAACCCAGCGGGCCTTTAGCAAATATGAGAAGTCTGCAGTGTTGGTCAG
CAACAGCCAGTTCTTAGTAAAACCACTTGATATGATTGTTGGGAAGGCATGGAATATGTTTGCTTCAAAA
GCCTACATTCATCAGTACACAAAATTTGGAATCGAAGAAGAGGACTTTTTAGACAGTTTCACGTCATTAG
AGCAGGTTGTTGCCAGTTACTGTAATCTCTGA

Translation (453 aa):
MSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEP
KVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIM
SMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIH
KICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHM
SENSLAYTTFTWAGLLKHLRQMLISNAKMEEGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRG
KDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASK
AYIHQYTKFGIEEEDFLDSFTSLEQVVASYCNL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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