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Report for CCDS11462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11462.1 Public Homo sapiens 17 TMEM106A 24 110 108 CCDS HistoryNCBI Gene:113277Re-query CCDS DB by CCDS ID:11462.1Re-query CCDS DB by GeneID:113277See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11462.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588659.5 ENSP00000466820.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588659.5Link to Ensembl Protein Viewer:ENSP00000466820.1Re-query CCDS DB by Nucleotide ID:ENST00000588659Re-query CCDS DB by Protein ID:ENSP00000466820
Original member Current member EBI ENST00000612339.4 ENSP00000483246.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612339.4Link to Ensembl Protein Viewer:ENSP00000483246.1Re-query CCDS DB by Nucleotide ID:ENST00000612339Re-query CCDS DB by Protein ID:ENSP00000483246
Original member Current member NCBI NM_001291586.2 NP_001278515.1 Accepted alive Link to Nucleotide Sequence:NM_001291586.2Link to Protein Sequence:NP_001278515.1Re-query CCDS DB by Nucleotide ID:NM_001291586Re-query CCDS DB by Protein ID:NP_001278515Link to BLAST:NP_001278515.1
Original member Current member NCBI NM_145041.4 NP_659478.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145041.4Link to Protein Sequence:NP_659478.1Re-query CCDS DB by Nucleotide ID:NM_145041Re-query CCDS DB by Protein ID:NP_659478Link to BLAST:NP_659478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278515.1 262 Q96A25-1 262 100% 0 0
NP_659478.1 262 Q96A25-1 262 100% 0 0

Chromosomal Locations for CCDS 11462.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43213042 43213252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43213828 43213891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43215788 43215941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43216449 43216589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43216697 43216740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43217259 43217312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43217681 43217801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGGTAAGACGTTTTCCCAGCTGGGCTCTTGGCGGGAGGATGAGAACAAGTCAATCCTGTCCTCCAAAC
CAGCCATTGGCAGCAAGGCTGTCAACTACTCCAGCACCGGTAGCAGCAAGTCTTTTTGTTCCTGTGTGCC
TTGTGAAGGAACTGCTGATGCCAGCTTCGTGACTTGTCCCACCTGCCAGGGCAGTGGCAAGATTCCCCAA
GAGCTGGAGAAGCAGTTGGTGGCTCTCATTCCCTATGGGGACCAGAGGCTGAAGCCCAAGCACACGAAGC
TCTTTGTGTTCCTGGCCGTGCTCATCTGCCTGGTGACCTCCTCCTTCATCGTCTTTTTCCTGTTTCCCCG
GTCCGTCATTGTGCAGCCTGCAGGCCTCAACTCCTCCACAGTGGCCTTTGATGAGGCTGATATCTACCTC
AACATAACGAATATCTTAAACATCTCCAATGGCAACTACTACCCCATTATGGTGACACAGCTGACCCTCG
AGGTTCTGCACCTGTCCCTCGTGGTGGGGCAGGTTTCCAACAACCTTCTCCTACACATTGGCCCTTTGGC
CAGTGAACAGATGTTTTACGCAGTAGCTACCAAGATACGGGATGAAAACACATACAAAATCTGTACCTGG
CTGGAAATCAAAGTCCACCATGTGCTTTTGCACATCCAGGGCACCCTGACCTGTTCATACCTGAGCCATT
CAGAGCAGCTGGTCTTTCAGAGCTATGAATATGTGGACTGCCGAGGAAACGCATCTGTGCCCCACCAGCT
GACCCCTCACCCACCATGA

Translation (262 aa):
MGKTFSQLGSWREDENKSILSSKPAIGSKAVNYSSTGSSKSFCSCVPCEGTADASFVTCPTCQGSGKIPQ
ELEKQLVALIPYGDQRLKPKHTKLFVFLAVLICLVTSSFIVFFLFPRSVIVQPAGLNSSTVAFDEADIYL
NITNILNISNGNYYPIMVTQLTLEVLHLSLVVGQVSNNLLLHIGPLASEQMFYAVATKIRDENTYKICTW
LEIKVHHVLLHIQGTLTCSYLSHSEQLVFQSYEYVDCRGNASVPHQLTPHPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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