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Report for CCDS10575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10575.1 Public Homo sapiens 16 SYT17 24 110 108 CCDS HistoryNCBI Gene:51760Re-query CCDS DB by CCDS ID:10575.1Re-query CCDS DB by GeneID:51760See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355377.7 ENSP00000347538.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355377.7Link to Ensembl Protein Viewer:ENSP00000347538.2Re-query CCDS DB by Nucleotide ID:ENST00000355377Re-query CCDS DB by Protein ID:ENSP00000347538
Original member Current member NCBI NM_016524.4 NP_057608.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016524.4Link to Protein Sequence:NP_057608.2Re-query CCDS DB by Nucleotide ID:NM_016524Re-query CCDS DB by Protein ID:NP_057608Link to BLAST:NP_057608.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057608.2 474 Q9BSW7 474 100% 0 0

Chromosomal Locations for CCDS 10575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19168647 19168661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19172760 19172777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19173430 19173578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19180391 19180539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19183528 19184147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19223045 19223165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19224683 19224838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19266880 19267076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCGTACATCCAGTTGGAACCATTAAACGAGGGTTTTCTTTCTAGAATCTCTGGTCTGCTGCTGTGCA
GATGGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGCTGTTGCCAGTCAAGTGAGGATGAAGT
TGAAATTCTGGGACCTTTCCCTGCTCAGACCCCTCCCTGGCTGATGGCCAGCCGGAGCAGTGACAAGGAT
GGTGACTCTGTCCACACGGCCAGCGAAGTCCCGCTGACCCCACGGACCAATTCCCCGGATGGAAGACGCT
CGTCCTCAGACACATCCAAGTCTACATACAGCCTGACGCGGAGGATTTCGAGTCTTGAGTCAAGACGTCC
CAGCTCTCCACTCATCGATATTAAACCCATCGAGTTTGGCGTTCTCAGCGCCAAGAAGGAGCCCATCCAA
CCTTCGGTGCTCAGACGGACCTATAACCCCGACGACTATTTCAGGAAGTTCGAACCCCACCTGTACTCCC
TCGACTCCAACAGCGACGATGTGGACTCTCTGACAGACGAGGAGATCCTGTCCAAGTACCAGCTGGGCAT
GCTGCACTTCAGCACTCAGTACGACCTGCTGCACAACCACCTCACCGTGCGCGTGATCGAGGCCAGGGAC
CTGCCACCTCCCATCTCCCACGATGGCTCGCGCCAGGACATGGCGCACTCCAACCCCTACGTCAAGATCT
GTCTCCTGCCAGACCAGAAGAACTCAAAGCAGACCGGGGTCAAACGCAAGACCCAGAAGCCCGTGTTTGA
GGAGCGCTACACCTTCGAGATCCCCTTCCTGGAGGCCCAGAGGAGGACCCTGCTCCTGACCGTGGTGGAT
TTTGATAAGTTCTCCCGCCACTGTGTCATTGGGAAAGTTTCTGTGCCTTTGTGTGAAGTTGACCTGGTCA
AGGGCGGGCACTGGTGGAAGGCGCTGATTCCCAGTTCTCAGAATGAAGTGGAGCTGGGGGAGCTGCTTCT
GTCACTGAATTATCTCCCAAGTGCTGGCAGACTGAATGTTGATGTCATTCGAGCCAAGCAACTTCTTCAG
ACAGATGTGAGCCAAGGTTCAGACCCCTTTGTGAAAATCCAGCTGGTGCATGGACTCAAACTTGTGAAAA
CCAAGAAGACGTCCTTCTTAAGGGGCACAATTGATCCTTTCTACAATGAATCCTTCAGCTTCAAAGTTCC
CCAAGAAGAACTGGAAAATGCCAGCCTAGTGTTTACAGTTTTCGGCCACAACATGAAGAGCAGCAATGAC
TTCATCGGGAGGATCGTCATTGGCCAGTACTCTTCAGGCCCCTCTGAGACCAACCACTGGAGGCGCATGC
TCAACACGCACCGCACAGCCGTGGAGCAGTGGCATAGCCTGAGGTCCCGAGCTGAGTGTGACCGCGTGTC
TCCTGCCTCCCTGGAGGTGACCTGA

Translation (474 aa):
MAYIQLEPLNEGFLSRISGLLLCRWTCRHCCQKCYESSCCQSSEDEVEILGPFPAQTPPWLMASRSSDKD
GDSVHTASEVPLTPRTNSPDGRRSSSDTSKSTYSLTRRISSLESRRPSSPLIDIKPIEFGVLSAKKEPIQ
PSVLRRTYNPDDYFRKFEPHLYSLDSNSDDVDSLTDEEILSKYQLGMLHFSTQYDLLHNHLTVRVIEARD
LPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVD
FDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSSQNEVELGELLLSLNYLPSAGRLNVDVIRAKQLLQ
TDVSQGSDPFVKIQLVHGLKLVKTKKTSFLRGTIDPFYNESFSFKVPQEELENASLVFTVFGHNMKSSND
FIGRIVIGQYSSGPSETNHWRRMLNTHRTAVEQWHSLRSRAECDRVSPASLEVT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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